Definitions of the simulated system
Type
Status
Protein assembly occupancy
k
∈
[
1
,
N
p
]
P
k
∈
{
u
n
b
o
u
n
d
,
b
o
u
n
d
}
Histones
i
∈
[
1
,
N
]
S
i
∈
{
m
e
0
,
m
e
1
,
m
e
2
,
m
e
3
}
Regions of histones
R
m
=
{
H
i
s
t
o
n
e
s
[
1
,
.
.
.
,
N
N
R
]
w
h
e
n
m
=
N
R
(
n
u
c
l
e
a
t
i
o
n
r
e
g
i
o
n
)
H
i
s
t
o
n
e
s
[
N
N
R
+
1
,
.
.
.
,
N
]
w
h
e
n
m
=
B
(
b
o
d
y
r
e
g
i
o
n
)
,
N
B
=
N
−
N
N
R
H
i
s
t
o
n
e
s
[
1
,
.
.
.
,
N
]
w
h
e
n
m
=
L
(
e
n
t
i
r
e
r
e
g
i
o
n
)
,
N
L
=
N
Table with Equations