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Author Details
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Author Details Group
ICGC Chronic Myeloid Disorders Group
- Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
Competing interests
No competing interests declared- Luca Malcovati, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy
- Sudhir Tauro, Division of Medial Sciences, University of Dundee, Dundee, UK
- Jacqueline Boultwood, Nuffield Department of Clinical Laboratory Sciences, University of Oxford, UK
HTML
<div class="author-details" data-popup-contents="pageUniqueIdForThisAuthor1" id="pageUniqueIdForThisAuthor1">
<h4 class="author-details__name">ICGC Chronic Myeloid Disorders Group</h4>
<section class="author-details__section">
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Competing interests</h5>
<span class="author-details__text">No competing interests declared</span>
</section>
<ol class="list list--bullet">
<li>Luca Malcovati, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy</li>
<li>Sudhir Tauro, Division of Medial Sciences, University of Dundee, Dundee, UK</li>
<li>Jacqueline Boultwood, Nuffield Department of Clinical Laboratory Sciences, University of Oxford, UK</li>
</ol>
</div>
Author Details Person
Jenny Bloggs
- Evolutionary Studies Institute and Centre of Excellence in PalaeoSciences, University of the Witwatersrand, Johannesburg, South Africa
- School of Geosciences, University of the Witwatersrand, Johannesburg, South Africa
Present addresses
- Department of Inventive Inventions, Univertity of Wessex, Windowchester, Wessex
- Department of Underwater Basket Weaving, University of Somewhere
Contribution
Conception and design, Acquisition of data, Analysis and interpretation of data, Drafting or revising the article, Contributed unpublished essential data or reagentsContributed equally with
- Francesca Smith
- Wendel Jakes III
For correspondence
Competing interests
No competing interests declaredHTML
<div class="author-details" data-popup-contents="pageUniqueIdForThisAuthor1" id="pageUniqueIdForThisAuthor1">
<h4 class="author-details__name">Jenny Bloggs</h4>
<section class="author-details__section">
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Evolutionary Studies Institute and Centre of Excellence in PalaeoSciences, University of the Witwatersrand, Johannesburg, South Africa</li>
<li class="author-details__text">School of Geosciences, University of the Witwatersrand, Johannesburg, South Africa</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Present addresses</h5>
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Department of Inventive Inventions, Univertity of Wessex, Windowchester, Wessex</li>
<li class="author-details__text">Department of Underwater Basket Weaving, University of Somewhere</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Contribution</h5>
<span class="author-details__text">Conception and design, Acquisition of data, Analysis and interpretation of data, Drafting or revising the article, Contributed unpublished essential data or reagents</span>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Contributed equally with</h5>
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Francesca Smith</li>
<li class="author-details__text">Wendel Jakes III</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">For correspondence</h5>
<ol class="author-details__list list list--bullet">
<li class="author-details__text"><a href="mailto:jenny@bloggs.com">jenny@bloggs.com</a></li>
<li class="author-details__text"><a href="tel:+1555432109876">+1 555-4321-09876</a></li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Competing interests</h5>
<span class="author-details__text">No competing interests declared</span>
</section>
<section class="author-details__section">
<span class="orcid">
<a href="https://orcid.org/0000-0002-3400-7927">
<picture>
<source srcset="../../assets/img/icons/orcid.svg" type="image/svg+xml">
<img src="../../assets/img/icons/orcid.png" class="orcid__icon"
alt="ORCID icon">
</picture> <span class="visuallyhidden">"This ORCID iD identifies the author of this article:"</span>
0000-0002-3400-7927</a>
</span>
</section>
</div>
Author Details Sub Group
ICGC Chronic Myeloid Disorders Group
- Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
Competing interests
No competing interests declaredSub-group 1
- Luca Malcovati, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy
- Sudhir Tauro, Division of Medial Sciences, University of Dundee, Dundee, UK
Sub-group 2
- Jacqueline Boultwood, Nuffield Department of Clinical Laboratory Sciences, University of Oxford, UK
HTML
<div class="author-details" data-popup-contents="pageUniqueIdForThisAuthor1" id="pageUniqueIdForThisAuthor1">
<h4 class="author-details__name">ICGC Chronic Myeloid Disorders Group</h4>
<section class="author-details__section">
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Competing interests</h5>
<span class="author-details__text">No competing interests declared</span>
</section>
<h5 class="author-details__secondary-name">Sub-group 1</h5>
<ol class="list list--bullet">
<li>Luca Malcovati, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy</li>
<li>Sudhir Tauro, Division of Medial Sciences, University of Dundee, Dundee, UK</li>
</ol>
<h5 class="author-details__secondary-name">Sub-group 2</h5>
<ol class="list list--bullet">
<li>Jacqueline Boultwood, Nuffield Department of Clinical Laboratory Sciences, University of Oxford, UK</li>
</ol>
</div>
Block Link
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class="block-link__link">
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Developmental Biology and Stem Cells
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alt=""
class="block-link__image"
>
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class="block-link__link">
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Developmental Biology and Stem Cells
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alt=""
class="block-link__image"
>
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class="block-link__link">
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Developmental Biology and Stem Cells
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<button class="button button--default button--small" type="button" id="button-id" name="button-name" aria-label="Descriptive and accessible name">Button small</button>
Code
<dock_design>
<SCOREFXNS>
<fullatom weights=beta symmetric = 0> </fullatom>
</SCOREFXNS>
<!-- Longabadaliasametatquedoloreaqueesthicillabadaliasametatquedoloreaqueesthicillabadaliasametatquedoloreaqueesthicillolong -->
<FILTERS>
<Ddg name=ddg scorefxn=fullatom threshold = 0 jump = 1 repeats = 1 repack = 1 confidence = 1/>
<Sasa name=sasa confidence = 0/>
<ShapeComplementarity name=shape verbose = 1 confidence = 0 jump = 1/>
</FILTERS>
<MOVERS>
<AtomTree name=docking_tree docking_ft = 1/>
<DockSetupMover name=setup_dock/>
<DockingProtocol name=dock docking_score_high=fullatom low_res_protocol_only = 0 docking_local_refine = 0 dock_min = 1 />
</MOVERS>
<APPLY_TO_POSE>
</APPLY_TO_POSE>
<PROTOCOLS>
<Add mover_name=docking_tree/>
<Add mover_name=setup_dock/>
<Add mover_name=dock/>
<Add filter_name=ddg/>
<Add filter_name=sasa/>
<Add filter_name=shape/>
</PROTOCOLS>
</dock_design>
HTML
<pre class="code"><code>&lt;dock_design&gt;
&nbsp;&nbsp;&lt;SCOREFXNS&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;fullatom weights=beta symmetric = 0&gt; &lt;/fullatom&gt;
&nbsp;&nbsp;&lt;/SCOREFXNS&gt;
&nbsp;&nbsp;&lt;!-- Longabadaliasametatquedoloreaqueesthicillabadaliasametatquedoloreaqueesthicillabadaliasametatquedoloreaqueesthicillolong --&gt;
&nbsp;&nbsp;&lt;FILTERS&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Ddg name=ddg scorefxn=fullatom threshold = 0 jump = 1 repeats = 1 repack = 1 confidence = 1/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Sasa name=sasa confidence = 0/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;ShapeComplementarity name=shape verbose = 1 confidence = 0 jump = 1/&gt;
&nbsp;&nbsp;&lt;/FILTERS&gt;
&nbsp;&nbsp;&lt;MOVERS&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;AtomTree name=docking_tree docking_ft = 1/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;DockSetupMover name=setup_dock/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;DockingProtocol name=dock docking_score_high=fullatom low_res_protocol_only = 0 docking_local_refine = 0 dock_min = 1 /&gt;
&nbsp;&nbsp;&lt;/MOVERS&gt;
&nbsp;&nbsp;&lt;APPLY_TO_POSE&gt;
&nbsp;&nbsp;&lt;/APPLY_TO_POSE&gt;
&nbsp;&nbsp;&lt;PROTOCOLS&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Add mover_name=docking_tree/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Add mover_name=setup_dock/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Add mover_name=dock/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Add filter_name=ddg/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Add filter_name=sasa/&gt;
&nbsp;&nbsp;&nbsp;&nbsp;&lt;Add filter_name=shape/&gt;
&nbsp;&nbsp;&lt;/PROTOCOLS&gt;
&lt;/dock_design&gt;</code></pre>
Date
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<span class="date"> <time datetime="2016-02-29">Feb 29, 2016</time></span>
Date Expanded
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<time class="date date--expanded" datetime="2015-12-18"> <span class="date__prominent">18</span> <span class="date__normal">Dec 2015</span></time>
Date Updated
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<span class="date"> Updated <time datetime="2016-02-29">Feb 29, 2016</time></span>
Definition List
- Research focus
- Pre-mRNA splicing
- post-transcriptional gene regulation
- Experimental organism
- Human
- Mouse
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<dl class="definition-list">
<dt>Research focus</dt><dd>Pre-mRNA splicing</dd><dd>post-transcriptional gene regulation</dd>
<dt>Experimental organism</dt><dd>Human</dd><dd>Mouse</dd>
</dl>
Definition List Inline
- Research focus
- Pre-mRNA splicing
- post-transcriptional gene regulation
- Experimental organism
- Human
- Mouse
HTML
<dl class="definition-list definition-list--inline">
<dt>Research focus</dt><dd>Pre-mRNA splicing</dd><dd>post-transcriptional gene regulation</dd>
<dt>Experimental organism</dt><dd>Human</dd><dd>Mouse</dd>
</dl>
Definition List Timeline With Version
- Version of Record
- Read the peer reviews
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- Reviewed Preprint
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- Reviewed Preprint
- v1
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<dl class="definition-list definition-list--timeline" aria-label="Version history">
<dt class="definition-list--vor definition-list--active">Version of Record</dt><dd><time datetime="2023-09-07">September 7, 2023</time><a href="#" aria-label="Descriptive and accessible name">Read the peer reviews</a></dd>
<dt><a href="#" aria-label="Descriptive and accessible name">Reviewed Preprint</a></dt><dd><span class="version">v3</span><time datetime="2023-08-19">August 19, 2023</time></dd>
<dt><a href="#" aria-label="Descriptive and accessible name">Reviewed Preprint</a></dt><dd><span class="version">v2</span><time datetime="2023-05-11">May 11, 2023</time></dd>
<dt><a href="#" aria-label="Descriptive and accessible name">Reviewed Preprint</a></dt><dd><span class="version">v1</span><time datetime="2023-03-19">March 19, 2023</time></dd>
</dl>
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<dl class="definition-list definition-list--timeline" aria-label="Version history">
<dt class="definition-list--active">Version of Record</dt><dd><time datetime="2023-09-27">September 27, 2023</time></dd>
<dt><a href="#" aria-label="Descriptive and accessible name">Accepted Manuscript</a></dt><dd><time datetime="2023-03-19">March 19, 2023</time></dd>
</dl>
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Doi Truncated
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<span class="doi">doi:
<a href="https://doi.org/10.7554/eLife.16370" class="doi__link">
10.7554/eLife.16370
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</span>
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<ul class="list list--line">
<li><strong>Version of Record published</strong><time datetime="2023-09-27">September 27, 2023</time></li>
<li><strong>Accepted Manuscript published</strong><time datetime="2023-09-27">September 27, 2023</time></li>
<li><strong>Accepted</strong><time datetime="2023-09-27">September 27, 2023</time></li>
<li><strong>Received</strong><time datetime="2023-09-27">September 27, 2023</time></li>
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<span class="math-block__math"><math><mrow><mtext>Body Mass</mtext><mo>=</mo><mn>0.060</mn><mo>×</mo><mtext>FSTpr</mtext><mo>+</mo><mn>13</mn><mo>.</mo><mn>856</mn><mo>,</mo><mtext>SEE</mtext><mo>=</mo><mn>6</mn><mo>.</mo><mn>78</mn><mo>,</mo><mtext>r</mtext><mo>=</mo><mn>0</mn><mo>.</mo><mn>50</mn><mo>,</mo><mtext>p</mtext><mo>=</mo><mo><</mo><mn>0</mn><mo>.</mo><mn>001</mn><mo>.</mo></mrow></math></span>
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Close- Schrenk F
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<div class='reference'><ol class='reference__authors_list'><li class='reference__author'><a href='https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22' class='reference__authors_link'>Schrenk F</a></li><li class='reference__author'> Bromage TG</li><li class='reference__author'> Betzler CG</li><li class='reference__author'> Ring U</li><li class='reference__author'> Juwayeyi YM</li><li class='reference__author'> <a href='https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22' class='reference__authors_link'>Schrenk F</a></li><li class='reference__author'> Bromage TG</li><li class='reference__author'> Betzler CG</li><li class='reference__author'> Ring U</li><li class='reference__author'> Juwayeyi YM</li><li class='reference__author'> <a href='https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22' class='reference__authors_link'>Schrenk F</a></li><li class='reference__author'> Bromage TG</li><li class='reference__author'> Betzler CG</li><li class='reference__author'> Ring U</li><li class='reference__author'> Juwayeyi YM</li><li class='reference__author'> <a href='https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22' class='reference__authors_link'>Schrenk F</a></li><li class='reference__author'> Bromage TG</li><li class='reference__author'> Betzler CG</li><li class='reference__author'> Ring U</li><li class='reference__author'> Juwayeyi YM</li><li class='reference__author'> <a href='https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22' class='reference__authors_link'>Schrenk F</a></li><li class='reference__author'> Bromage TG</li><li class='reference__author'> Betzler CG</li><li class='reference__author'> Ring U</li><li class='reference__author'>Juwayeyi YM</li></ol> <span class='reference__authors_list_suffix'>(1993)</span> <div class='reference__title'>Oldest <i>Homo</i> and Pliocene biogeography of the Malawi rift</div><div class='reference__origin'> <i>Nature</i> <strong>365</strong>:833–836.</div><span class='doi'>https://doi.org/10.1038/365833a0.1</span></div><ol class='button-collection'><li class='button-collection__item'> <button class='button button--default' type='button' data-behaviour='ButtonClipboard' data-clipboard='Schrenk F Bromage TG Betzler CG Ring U Juwayeyi YM Schrenk F Bromage TG Betzler CG Ring U Juwayeyi YM Schrenk F Bromage TG Betzler CG Ring U Juwayeyi YM Schrenk F Bromage TG Betzler CG Ring U Juwayeyi YM Schrenk F Bromage TG Betzler CG Ring UJuwayeyi YM(1993) Oldest Homo and Pliocene biogeography of the Malawi rift Nature 365:833–836.https://doi.org/10.1038/365833a0.1'>Copy to clipboard</button></li><li class='button-collection__item'> <button class='button button--default button--secondary' type='button'>Download Bibtex</button></li><li class='button-collection__item'> <button class='button button--default button--secondary' type='button'>Download .RIS</button></li></ol>
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<a class="social-media-sharer email" href="mailto:?subject=Some%20article%20title&amp;body=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Share by Email">
<svg width="24px" height="24px" viewBox="0 0 24 24" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="email" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<rect id="clear-button-bg" x="0" y="0" width="24" height="24"></rect>
<path d="M20,4 L4,4 C2.9,4 2.01,4.9 2.01,6 L2,18 C2,19.1 2.9,20 4,20 L20,20 C21.1,20 22,19.1 22,18 L22,6 C22,4.9 21.1,4 20,4 Z M20,8 L12,13 L4,8 L4,6 L12,11 L20,6 L20,8 Z" id="Shape" fill="#000000" fill-rule="nonzero"></path>
</g>
</svg>
</a>
</li>
<li>
<a class="social-media-sharer" href="https://twitter.com/intent/tweet/?text=Some%20article%20title&amp;url=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Tweet a link to this page">
<svg width="24px" height="24px" viewBox="0 0 24 24" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="x-24-articles" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<rect id="Rectangle" x="0" y="0" width="24" height="24"></rect>
<path d="M13.6604555,11.4785798 L20.954365,3 L19.225942,3 L12.8926412,10.3618317 L7.83425247,3 L2,3 L9.64927632,14.1323934 L2,23.023486 L3.72852106,23.023486 L10.4166498,15.2491415 L15.7586789,23.023486 L21.5929313,23.023486 L13.660031,11.4785798 L13.6604555,11.4785798 Z M11.293009,14.2304723 L10.5179779,13.1219369 L4.35133136,4.30120576 L7.00623887,4.30120576 L11.9827944,11.4198173 L12.7578255,12.5283527 L19.2267583,21.7814574 L16.5718508,21.7814574 L11.293009,14.2308968 L11.293009,14.2304723 Z" id="Shape" fill="#212121" fill-rule="nonzero"></path>
</g>
</svg>
</a>
</li>
<li>
<a class="social-media-sharer" href="https://facebook.com/sharer/sharer.php?u=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Share on Facebook">
<svg width="24px" height="24px" viewBox="0 0 24 24" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="facebook" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g>
<rect id="clear-button-bg" x="0" y="0" width="24" height="24"></rect>
<path d="M11.8969072,2 C6.43099227,2 2,6.41067993 2,11.8515383 C2,16.7687258 5.61915593,20.844338 10.3505155,21.5833958 L10.3505155,14.6992486 L7.83762887,14.6992486 L7.83762887,11.8515383 L10.3505155,11.8515383 L10.3505155,9.68112126 C10.3505155,7.21207948 11.8280541,5.84825714 14.0887242,5.84825714 C15.1715271,5.84825714 16.3041237,6.04067 16.3041237,6.04067 L16.3041237,8.465072 L15.0561469,8.465072 C13.8267075,8.465072 13.443299,9.22446783 13.443299,10.0035475 L13.443299,11.8515383 L16.1881443,11.8515383 L15.7493557,14.6992486 L13.443299,14.6992486 L13.443299,21.5833958 C18.1746585,20.844338 21.7938144,16.7687258 21.7938144,11.8515383 C21.7938144,6.41067993 17.3628222,2 11.8969072,2 Z" id="Fill-1" fill="#212121" fill-rule="nonzero"></path>
</g>
</g>
</svg>
</a>
</li>
<li>
<a class="social-media-sharer" href="https://www.linkedin.com/shareArticle?url=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_self" aria-label="Share this page to LinkedIn (opens up email program, if configured on this system)">
<svg width="24px" height="24px" viewBox="0 0 24 24" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="linkedin" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g>
<rect id="Rectangle" x="0" y="0" width="24" height="24"></rect>
<path d="M18.9751954,18.9751435 L16.0232549,18.9751435 L16.0232549,14.3522816 C16.0232549,13.2499163 16.0035753,11.8308324 14.4879383,11.8308324 C12.9504693,11.8308324 12.7152366,13.0319032 12.7152366,14.2720257 L12.7152366,18.974836 L9.76329605,18.974836 L9.76329605,9.46835755 L12.5971589,9.46835755 L12.5971589,10.7675189 L12.6368256,10.7675189 C13.2146663,9.77952684 14.2890899,9.18943873 15.4328668,9.23189481 C18.4247815,9.23189481 18.9764254,11.1998552 18.9764254,13.7600486 L18.9751954,18.9751435 Z M6.43252317,8.16888879 C5.48643292,8.16905854 4.71933758,7.40223852 4.7191677,6.45614827 C4.71899794,5.51005802 5.48581795,4.74296266 6.4319082,4.74279278 C7.37799845,4.74262301 8.14509382,5.50944301 8.14526371,6.45553326 C8.14534522,6.90986184 7.96494211,7.34561469 7.64374096,7.66693118 C7.32253981,7.98824766 6.88685175,8.16880719 6.43252317,8.16888879 M7.90849343,18.9751435 L4.95347798,18.9751435 L4.95347798,9.46835755 L7.90849343,9.46835755 L7.90849343,18.9751435 Z M20.4468607,2.00148552 L3.47012787,2.00148552 C2.66777241,1.99243094 2.00979231,2.63513479 2,3.43748159 L2,20.4846305 C2.00945705,21.2873639 2.6673842,21.9307041 3.47012787,21.9223954 L20.4468607,21.9223954 C21.2511925,21.9322515 21.9116962,21.2889485 21.922831,20.4846305 L21.922831,3.43625161 C21.9113617,2.63231978 21.2508045,1.98965267 20.4468607,2" id="Path_2520" fill="#212121" fill-rule="nonzero"></path>
</g>
</g>
</svg>
</a>
</li>
<li>
<a class="social-media-sharer" href="https://reddit.com/submit/?url=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Share this page on Reddit">
<svg width="24px" height="24px" viewBox="0 0 24 24" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="reddit" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g>
<rect id="Rectangle" x="0" y="0" width="24" height="24"></rect>
<path d="M11.9872095,1.051163 C18.0270212,1.051163 22.923256,5.94739779 22.923256,11.9872095 C22.923256,18.0270212 18.0270212,22.923256 11.9872095,22.923256 C5.94739779,22.923256 1.051163,18.0270212 1.051163,11.9872095 C1.051163,5.94739779 5.94739779,1.051163 11.9872095,1.051163 Z M16.5534886,5.37441881 C16.1058142,5.37441881 15.7220932,5.63023277 15.5430235,6.0139537 L12.895349,5.451163 C12.8186049,5.4383723 12.7418607,5.451163 12.6779072,5.48953509 C12.6139537,5.52790719 12.5755816,5.59186067 12.5500002,5.66860486 L11.7441863,9.48023277 C10.0430235,9.53139556 8.52093044,10.0302328 7.42093044,10.8360467 C7.13953509,10.5674421 6.74302347,10.3883723 6.32093044,10.3883723 C5.4383723,10.3883723 4.72209323,11.1046514 4.72209323,11.9872095 C4.72209323,12.6395351 5.10581416,13.1895351 5.66860486,13.445349 C5.64302347,13.5988374 5.63023277,13.7651165 5.63023277,13.9313956 C5.63023277,16.3872095 8.48255835,18.3697677 12.0127909,18.3697677 C15.5430235,18.3697677 18.395349,16.3872095 18.395349,13.9313956 C18.395349,13.7651165 18.3825583,13.6116281 18.356977,13.4581397 C18.8813956,13.2023258 19.2779072,12.6395351 19.2779072,11.9872095 C19.2779072,11.1046514 18.5616281,10.3883723 17.67907,10.3883723 C17.2441863,10.3883723 16.8604653,10.5546514 16.57907,10.8360467 C15.4918607,10.0558142 13.9825583,9.54418626 12.3197677,9.48023277 L13.0488374,6.06511649 L15.4151165,6.5639537 C15.4406979,7.16511649 15.9395351,7.651163 16.5534886,7.651163 C17.1802328,7.651163 17.6918607,7.13953509 17.6918607,6.51279091 C17.6918607,5.88604672 17.1802328,5.37441881 16.5534886,5.37441881 Z M9.72325602,15.7093025 C10.2093025,16.195349 11.2581397,16.3744188 12.0127909,16.3744188 C12.7674421,16.3744188 13.8034886,16.195349 14.3023258,15.7093025 C14.4174421,15.5941863 14.6093025,15.5941863 14.7244188,15.7093025 C14.8139537,15.8372095 14.8139537,16.0162793 14.6988374,16.1313956 C13.9186049,16.9116281 12.4348839,16.9627909 12.0000002,16.9627909 C11.5651165,16.9627909 10.0686049,16.8988374 9.301163,16.1313956 C9.18604672,16.0162793 9.18604672,15.8244188 9.301163,15.7093025 C9.41627928,15.5941863 9.60813974,15.5941863 9.72325602,15.7093025 Z M9.48023277,11.9872095 C10.1069769,11.9872095 10.6186049,12.4988374 10.6186049,13.1255816 C10.6186049,13.7523258 10.1069769,14.2639537 9.48023277,14.2639537 C8.85348858,14.2639537 8.34186067,13.7523258 8.34186067,13.1255816 C8.34186067,12.4988374 8.85348858,11.9872095 9.48023277,11.9872095 Z M14.4941863,11.9872095 C15.1209304,11.9872095 15.6325583,12.4988374 15.6325583,13.1255816 C15.6325583,13.7523258 15.1209304,14.2639537 14.4941863,14.2639537 C13.8674421,14.2639537 13.3558142,13.7523258 13.3558142,13.1255816 C13.3558142,12.4988374 13.8674421,11.9872095 14.4941863,11.9872095 Z" id="Combined-Shape" fill="#212121" fill-rule="nonzero"></path>
</g>
</g>
</svg>
</a>
</li>
<li>
<a class="social-media-sharer" href="https://toot.kytta.dev/?text=Some%20article%20title%20https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Share this page on Mastodon">
<svg width="24px" height="24px">
<g id="mastodon" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g>
<rect id="Rectangle" x="0" y="0" width="24" height="24"></rect>
<path d='M11.5412949,0 C14.6936837,0.0250851513 17.7279692,0.357269448 19.4950021,1.1471931 C19.4950021,1.1471931 22.9995752,2.67324958 22.9995752,7.87958222 L23,8.27840764 C22.9948717,9.32900538 22.9399626,12.2394095 22.5108214,14.3877566 C22.1727192,16.0807457 19.4826471,17.9335557 16.3930961,18.2926354 C14.7820287,18.4797396 13.1958041,18.6517151 11.5043627,18.5762011 C8.73816776,18.4528442 6.55544838,17.9335557 6.55544838,17.9335557 C6.55544838,18.1956567 6.57205459,18.4452152 6.605267,18.6786105 C6.96489093,21.335697 9.312211,21.4948713 11.5357152,21.5690923 C13.7799439,21.6438306 15.7782681,21.0305374 15.7782681,21.0305374 L15.8704657,23.0052819 C15.8704657,23.0052819 14.3007146,23.8257215 11.5043627,23.9766203 C9.96237703,24.0591169 8.04774824,23.9388633 5.8177344,23.3643616 C0.981210876,22.1183796 0.149439349,17.1004442 0.022169409,12.0089343 C-0.0166226796,10.4972307 0.00729025582,9.07177343 0.00729025582,7.87958222 C0.00729025582,2.67324958 3.51199627,1.1471931 3.51199627,1.1471931 C5.27916201,0.357269448 8.31145476,0.0250851513 11.4638436,0 L11.5412949,0 Z M15.8599153,5 C14.461897,5 13.4033065,5.46697151 12.7035195,6.40103745 L12.0229667,7.39238391 L11.3425554,6.40103745 C10.642627,5.46697151 9.58403654,5 8.18615964,5 C6.97793807,5 6.00462882,5.36912752 5.26142334,6.08919046 C4.54070495,6.8092534 4.18190148,7.78253068 4.18190148,9.00730143 L4.18190148,15 L6.91358821,15 L6.91358821,9.1834452 C6.91358821,7.95732233 7.50716259,7.33498047 8.69445278,7.33498047 C10.0071899,7.33498047 10.6652556,8.0732355 10.6652556,9.5330285 L10.6652556,12.7167687 L13.3808194,12.7167687 L13.3808194,9.5330285 C13.3808194,8.0732355 14.0387436,7.33498047 15.3514807,7.33498047 C16.5387709,7.33498047 17.1323453,7.95732233 17.1323453,9.1834452 L17.1323453,15 L19.864032,15 L19.864032,9.00730143 C19.864032,7.78253068 19.5052285,6.8092534 18.7846516,6.08919046 C18.0413047,5.36912752 17.0679954,5 15.8599153,5 Z' id='Combined-Shape' fill='#212121' fill-rule='nonzero'></path>
</g>
</g>
</svg>
</a>
</li>
</ul>
</div>
Social Media Sharers
HTML
<div class="social-media-sharers">
<a class="social-media-sharer" href="https://facebook.com/sharer/sharer.php?u=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Share on Facebook">
<div class="social-media-sharer__icon_wrapper social-media-sharer__icon_wrapper--facebook social-media-sharer__icon_wrapper--small"><div aria-hidden="true" class="social-media-sharer__icon social-media-sharer__icon--solid">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M18.77 7.46H14.5v-1.9c0-.9.6-1.1 1-1.1h3V.5h-4.33C10.24.5 9.5 3.44 9.5 5.32v2.15h-3v4h3v12h5v-12h3.85l.42-4z"/></svg>
</div>
</div>
</a>
<a class="social-media-sharer" href="https://twitter.com/intent/tweet/?text=Some%20article%20title&amp;url=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Tfweet a link to this page">
<div class="social-media-sharer__icon_wrapper social-media-sharer__icon_wrapper--twitter social-media-sharer__icon_wrapper--small">
<div aria-hidden="true" class="social-media-sharer__icon social-media-sharer__icon--solid">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24">
<path d="M13.6604555,11.4785798 L20.954365,3 L19.225942,3 L12.8926412,10.3618317 L7.83425247,3 L2,3 L9.64927632,14.1323934 L2,23.023486 L3.72852106,23.023486 L10.4166498,15.2491415 L15.7586789,23.023486 L21.5929313,23.023486 L13.660031,11.4785798 L13.6604555,11.4785798 Z M11.293009,14.2304723 L10.5179779,13.1219369 L4.35133136,4.30120576 L7.00623887,4.30120576 L11.9827944,11.4198173 L12.7578255,12.5283527 L19.2267583,21.7814574 L16.5718508,21.7814574 L11.293009,14.2308968 L11.293009,14.2304723 Z" />
</svg>
</div>
</div>
</a>
<a class="social-media-sharer" href="mailto:?subject=Some%20article%20title&amp;body=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_self" aria-label="Email a link to this page (opens up email program, if configured on this system)">
<div class="social-media-sharer__icon_wrapper social-media-sharer__icon_wrapper--email social-media-sharer__icon_wrapper--small"><div aria-hidden="true" class="social-media-sharer__icon social-media-sharer__icon--solid">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M22 4H2C.9 4 0 4.9 0 6v12c0 1.1.9 2 2 2h20c1.1 0 2-.9 2-2V6c0-1.1-.9-2-2-2zM7.25 14.43l-3.5 2c-.08.05-.17.07-.25.07-.17 0-.34-.1-.43-.25-.14-.24-.06-.55.18-.68l3.5-2c.24-.14.55-.06.68.18.14.24.06.55-.18.68zm4.75.07c-.1 0-.2-.03-.27-.08l-8.5-5.5c-.23-.15-.3-.46-.15-.7.15-.22.46-.3.7-.14L12 13.4l8.23-5.32c.23-.15.54-.08.7.15.14.23.07.54-.16.7l-8.5 5.5c-.08.04-.17.07-.27.07zm8.93 1.75c-.1.16-.26.25-.43.25-.08 0-.17-.02-.25-.07l-3.5-2c-.24-.13-.32-.44-.18-.68s.44-.32.68-.18l3.5 2c.24.13.32.44.18.68z"/></svg>
</div>
</div>
</a>
<a class="social-media-sharer" href="https://reddit.com/submit/?url=https%3A%2F%2Fexample.com%2Fsome-article-url" target="_blank" rel="noopener noreferrer" aria-label="Share this page on Reddit">
<div class="social-media-sharer__icon_wrapper social-media-sharer__icon_wrapper--reddit social-media-sharer__icon_wrapper--small"><div aria-hidden="true" class="social-media-sharer__icon social-media-sharer__icon--solid">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M24 11.5c0-1.65-1.35-3-3-3-.96 0-1.86.48-2.42 1.24-1.64-1-3.75-1.64-6.07-1.72.08-1.1.4-3.05 1.52-3.7.72-.4 1.73-.24 3 .5C17.2 6.3 18.46 7.5 20 7.5c1.65 0 3-1.35 3-3s-1.35-3-3-3c-1.38 0-2.54.94-2.88 2.22-1.43-.72-2.64-.8-3.6-.25-1.64.94-1.95 3.47-2 4.55-2.33.08-4.45.7-6.1 1.72C4.86 8.98 3.96 8.5 3 8.5c-1.65 0-3 1.35-3 3 0 1.32.84 2.44 2.05 2.84-.03.22-.05.44-.05.66 0 3.86 4.5 7 10 7s10-3.14 10-7c0-.22-.02-.44-.05-.66 1.2-.4 2.05-1.54 2.05-2.84zM2.3 13.37C1.5 13.07 1 12.35 1 11.5c0-1.1.9-2 2-2 .64 0 1.22.32 1.6.82-1.1.85-1.92 1.9-2.3 3.05zm3.7.13c0-1.1.9-2 2-2s2 .9 2 2-.9 2-2 2-2-.9-2-2zm9.8 4.8c-1.08.63-2.42.96-3.8.96-1.4 0-2.74-.34-3.8-.95-.24-.13-.32-.44-.2-.68.15-.24.46-.32.7-.18 1.83 1.06 4.76 1.06 6.6 0 .23-.13.53-.05.67.2.14.23.06.54-.18.67zm.2-2.8c-1.1 0-2-.9-2-2s.9-2 2-2 2 .9 2 2-.9 2-2 2zm5.7-2.13c-.38-1.16-1.2-2.2-2.3-3.05.38-.5.97-.82 1.6-.82 1.1 0 2 .9 2 2 0 .84-.53 1.57-1.3 1.87z"/></svg>
</div>
</div>
</a>
</div>
Speech Bubble
HTML
<button class="speech-bubble"
data-behaviour="SpeechBubble"
aria-live="polite">
<span class="speech-bubble__inner">8</span>
</button>
Speech Bubble Has Placeholder
HTML
<button class="speech-bubble speech-bubble--has-placeholder"
data-behaviour="SpeechBubble"
aria-live="polite">
<span class="speech-bubble__inner">+</span>
</button>
Speech Bubble Share Your Feedback
HTML
<button class="speech-bubble speech-bubble--wrapped "
data-behaviour="SpeechBubble"
aria-live="polite">
<span class="speech-bubble--wrapped__prefix">Add a comment</span>
<span class="speech-bubble__inner">999</span>
</button>
Speech Bubble Small Is Loading
HTML
<button class="speech-bubble speech-bubble--small speech-bubble--loading"
data-behaviour="SpeechBubble"
aria-live="polite">
<span class="speech-bubble__inner"></span>
</button>
Speech Bubble Small
HTML
<button class="speech-bubble speech-bubble--small "
data-behaviour="SpeechBubble"
aria-live="polite">
<span class="speech-bubble__inner">340</span>
</button>
Speech Bubble Wrapped Has Placeholder
HTML
<button class="speech-bubble speech-bubble--has-placeholder speech-bubble--wrapped "
data-behaviour="SpeechBubble"
aria-live="polite">
<span class="speech-bubble--wrapped__prefix">Add a comment</span>
<span class="speech-bubble__inner">+</span>
</button>
Table
F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | Partial η2 | Original effect size f | Replication total sample size | Detectable effect size f |
---|---|---|---|---|---|---|---|---|---|---|---|---|
F(24,39) = 0.8678 (interaction) | 0.348120 | 0.7307699 | 169* | 0.3895070 | ||||||||
F(2,39) = 0.8075 (treatments) | 0.039766 | 0.2035014 | 169 | 0.2415459 | ||||||||
F(12,39) = 187.6811 (hematology parameters) | 0.982978 | 7.599178 | 169* | 0.3331365 |
F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | F(Dfn, Dfd) | Partial η2 | Original effect size f | Replication total sample size | Detectable effect size f |
---|---|---|---|---|---|---|---|---|---|---|---|---|
F(24,39) = 0.8678 (interaction) | 0.348120 | 0.7307699 | 169* | 0.3895070 | ||||||||
F(2,39) = 0.8075 (treatments) | 0.039766 | 0.2035014 | 169* | 0.2415459 | ||||||||
F(12,39) = 187.6811 (hematology parameters) | 0.982978 | 7.599178 | 169* | 0.3331365 |
-
*
Footnote 1.
-
The values in parenthesis refer to the highest resolution shell.
*Rmerge=∑hkl∑i|I(hkl;i)−<I(hkl)>|∑hkl∑i(hkl;i) where I(hkl;i) is the intensity of an individual measurement of a reflection and <I(hkl)> is the average intensity of that reflection.
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<table><thead><tr><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>Partial η<sup>2</sup></th><th>Original effect size <em>f</em></th><th>Replication total sample size</th><th>Detectable effect size <em>f</em></th></tr></thead><tbody><tr><td>F(24,39) = 0.8678 (interaction)</td><td>0.348120</td><td>0.7307699</td><td>169<a href="#tblfn1">*</a></td><td>0.3895070</td></tr><tr><td>F(2,39) = 0.8075 (treatments)</td><td>0.039766</td><td>0.2035014</td><td>169</td><td>0.2415459</td></tr><tr><td>F(12,39) = 187.6811 (hematology parameters)</td><td>0.982978</td><td>7.599178</td><td>169<a href="#tblfn1">*</a></td><td>0.3331365</td></tr></tbody></table>
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<div class="table__table">
<table><thead><tr><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>F(Dfn, Dfd)</th><th>Partial η<sup>2</sup></th><th>Original effect size <em>f</em></th><th>Replication total sample size</th><th>Detectable effect size <em>f</em></th></tr></thead><tbody><tr><td>F(24,39) = 0.8678 (interaction)</td><td>0.348120</td><td>0.7307699</td><td>169<a href="#tblfn1">*</a></td><td>0.3895070</td></tr><tr><td>F(2,39) = 0.8075 (treatments)</td><td>0.039766</td><td>0.2035014</td><td>169<a href="#tblfn1">*</a></td><td>0.2415459</td></tr><tr><td>F(12,39) = 187.6811 (hematology parameters)</td><td>0.982978</td><td>7.599178</td><td>169<a href="#tblfn1">*</a></td><td>0.3331365</td></tr></tbody></table>
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<ol class="list">
<li class="table-footnote" id="tblfn1">
<div class="table-footnote__label">*</div>
<div class="table-footnote__text"><p>Footnote 1.</p></div>
</li>
<li class="table-footnote" >
<div class="table-footnote__text"><p>The values in parenthesis refer to the highest resolution shell.</p><p><sup>*</sup><span class="MathJax_Preview" style="display: none;"></span><span id="MathJax-Element-1-Frame" class="mjx-chtml MathJax_CHTML" tabindex="0" data-mathml="<math xmlns="http://www.w3.org/1998/Math/MathML" id="inf1"><mstyle displaystyle="true" scriptlevel="0"><mrow><msub><mi>R</mi><mrow><mi>m</mi><mi>e</mi><mi>r</mi><mi>g</mi><mi>e</mi></mrow></msub><mo>=</mo><mfrac><mrow><msub><mo movablelimits="false">&#x2211;</mo><mrow><mi>h</mi><mi>k</mi><mi>l</mi></mrow></msub><msub><mo movablelimits="false">&#x2211;</mo><mrow><mi>i</mi></mrow></msub><mrow><mo stretchy="false">|</mo></mrow><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo>;</mo><mi>i</mi><mo stretchy="false">)</mo><mo>&#x2212;</mo><mo>&lt;</mo><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo stretchy="false">)</mo><mo>&gt;</mo><mrow><mo stretchy="false">|</mo></mrow></mrow><mrow><msub><mo movablelimits="false">&#x2211;</mo><mrow><mi>h</mi><mi>k</mi><mi>l</mi></mrow></msub><msub><mo movablelimits="false">&#x2211;</mo><mrow><mi>i</mi></mrow></msub><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo>;</mo><mi>i</mi><mo stretchy="false">)</mo></mrow></mfrac></mrow></mstyle></math>" role="presentation" style="font-size: 107%; 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position: relative;"><span id="inf2" class="mjx-math" aria-hidden="true"><span id="MJXc-Node-67" class="mjx-mrow"><span id="MJXc-Node-68" class="mjx-mstyle"><span id="MJXc-Node-69" class="mjx-mrow"><span id="MJXc-Node-70" class="mjx-mrow"><span id="MJXc-Node-71" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.435em; padding-bottom: 0.291em; padding-right: 0.064em;">I</span></span><span id="MJXc-Node-72" class="mjx-mo"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.435em; padding-bottom: 0.579em;">(</span></span><span id="MJXc-Node-73" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.507em; padding-bottom: 0.291em;">h</span></span><span id="MJXc-Node-74" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.507em; padding-bottom: 0.291em;">k</span></span><span id="MJXc-Node-75" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.507em; padding-bottom: 0.291em;">l</span></span><span id="MJXc-Node-76" class="mjx-mo"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.147em; padding-bottom: 0.507em;">;</span></span><span id="MJXc-Node-77" class="mjx-mi MJXc-space1"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.435em; padding-bottom: 0.291em;">i</span></span><span id="MJXc-Node-78" class="mjx-mo"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.435em; padding-bottom: 0.579em;">)</span></span></span></span></span></span></span><span class="MJX_Assistive_MathML" role="presentation"><math xmlns="http://www.w3.org/1998/Math/MathML" id="inf2"><mstyle displaystyle="true" scriptlevel="0"><mrow><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo>;</mo><mi>i</mi><mo stretchy="false">)</mo></mrow></mstyle></math></span></span><script type="math/mml" id="MathJax-Element-2"><math id="inf2"><mstyle displaystyle="true" scriptlevel="0"><mrow><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo>;</mo><mi>i</mi><mo stretchy="false">)</mo></mrow></mstyle></math></script> is the intensity of an individual measurement of a reflection and <span class="MathJax_Preview" style="display: none;"></span><span id="MathJax-Element-3-Frame" class="mjx-chtml MathJax_CHTML" tabindex="0" data-mathml="<math xmlns="http://www.w3.org/1998/Math/MathML" id="inf3"><mstyle displaystyle="true" scriptlevel="0"><mrow><mo>&lt;</mo><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo stretchy="false">)</mo><mo>&gt;</mo></mrow></mstyle></math>" role="presentation" style="font-size: 107%; position: relative;"><span id="inf3" class="mjx-math" aria-hidden="true"><span id="MJXc-Node-80" class="mjx-mrow"><span id="MJXc-Node-81" class="mjx-mstyle"><span id="MJXc-Node-82" class="mjx-mrow"><span id="MJXc-Node-83" class="mjx-mrow"><span id="MJXc-Node-84" class="mjx-mo"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.219em; padding-bottom: 0.363em;"><</span></span><span id="MJXc-Node-85" class="mjx-mi MJXc-space3"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.435em; padding-bottom: 0.291em; padding-right: 0.064em;">I</span></span><span id="MJXc-Node-86" class="mjx-mo"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.435em; padding-bottom: 0.579em;">(</span></span><span id="MJXc-Node-87" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.507em; padding-bottom: 0.291em;">h</span></span><span id="MJXc-Node-88" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.507em; padding-bottom: 0.291em;">k</span></span><span id="MJXc-Node-89" class="mjx-mi"><span class="mjx-char MJXc-TeX-math-I" style="padding-top: 0.507em; padding-bottom: 0.291em;">l</span></span><span id="MJXc-Node-90" class="mjx-mo"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.435em; padding-bottom: 0.579em;">)</span></span><span id="MJXc-Node-91" class="mjx-mo MJXc-space3"><span class="mjx-char MJXc-TeX-main-R" style="padding-top: 0.219em; padding-bottom: 0.363em;">></span></span></span></span></span></span></span><span class="MJX_Assistive_MathML" role="presentation"><math xmlns="http://www.w3.org/1998/Math/MathML" id="inf3"><mstyle displaystyle="true" scriptlevel="0"><mrow><mo><</mo><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo stretchy="false">)</mo><mo>></mo></mrow></mstyle></math></span></span><script type="math/mml" id="MathJax-Element-3"><math id="inf3"><mstyle displaystyle="true" scriptlevel="0"><mrow><mo><</mo><mi>I</mi><mo stretchy="false">(</mo><mi>h</mi><mi>k</mi><mi>l</mi><mo stretchy="false">)</mo><mo>></mo></mrow></mstyle></math></script> is the average intensity of that reflection.</p></div>
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Table Code Blocks
data = {{},{},{}...,{}}; loglog=Function[{x,y},{Log[x/],Log[y]}]; datalog=Apply[loglog,data,{1}]; peakr = Function[{},Piecewise[{{+(1/2)*Log[1-(2/3)*] +*(1-(1-(2/3)*)^(3/2),<3/2/,Infinity}}]]; fit = NonlinearModelFit[datalog,{peakr[],{}}, {{},{},{}},x,Method->NMinimize]; fit['ParameterTable'] |
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Table with Code Blocks
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<table><tbody><tr><td align='left' valign='bottom'><span class='monospace'> data = </span><span class='monospace'>{{</span><math id='inf692'><mrow><msub><mi>x</mi><mn mathvariant='normal'>1</mn></msub><mo mathvariant='normal'>,</mo><msub><mi>R</mi><mn mathvariant='normal'>1</mn></msub></mrow></math><span class='monospace'>},{</span><math id='inf693'><mrow><msub><mi>x</mi><mn mathvariant='normal'>2</mn></msub><mo mathvariant='normal'>,</mo><msub><mi>R</mi><mn mathvariant='normal'>2</mn></msub></mrow></math><span class='monospace'>},{</span><math id='inf694'><mrow><msub><mi>x</mi><mn mathvariant='normal'>3</mn></msub><mo mathvariant='normal'>,</mo><msub><mi>R</mi><mn mathvariant='normal'>3</mn></msub></mrow></math><span class='monospace'>}...,{</span><math id='inf695'><mrow><msub><mi>x</mi><mi>m</mi></msub><mo mathvariant='normal'>,</mo><msub><mi>R</mi><mi>m</mi></msub></mrow></math><span class='monospace'>}};</span><br/><span class='monospace'>loglog=Function</span><span class='monospace'>[{x,y},{Log[x/</span><math id='inf6960'><msub><mrow><mo mathvariant='normal'stretchy='false'>[</mo><mrow><mi>C</mi><mo mathvariant='monospace'></mo><msup><mi>a</mi><mrow><mn mathvariant='normal'>2</mn><mo mathvariant='normal'>+</mo></mrow></msup></mrow><mo mathvariant='normal' stretchy='false'>]</mo></mrow><mn mathvariant='normal'>0</mn></msub></math><span class='monospace'>],Log[y]}];</span><br/><span class='monospace'>datalog=Apply[loglog,data,{1}];</span><br/><br/><br/><span class='monospace'>peakr = Function[{</span><math id='inf6970'><mrow><mi>A</mi><mo mathvariant='normal'>,</mo><mi>B</mi><mo mathvariant='normal'>,</mo><mi>C</mi><mo mathvariant='normal'>,</mo><mi>x</mi></mrow></math><span class='monospace'>},Piecewise[{{</span><math id='inf6980'><mi>A</mi></math><span class='monospace'>+(1/2)*Log[1-(2/3)*</span><math id='inf6990'><mrow><mi>B</mi><mo mathvariant='monospace'></mo><mi>x</mi></mrow></math><span class='monospace'>]</span><br/><span class='monospace'></span><span class='monospace'>+</span><math id='inf7000'><mi>C</mi></math><span class='monospace'>*(1-(1-(2/3)*</span><math id='inf7010'><mrow><mi>B</mi><mo mathvariant='monospace'></mo><mi>x</mi></mrow></math><span class='monospace'>)^(3/2),</span><math id='inf702'><mi mathvariant='normal'>x</mi></math><span class='monospace'><3/2/</span><math id='inf703'><mi>B</mi></math><span class='monospace'>,Infinity}}]];</span><br/><br/><br/><span class='monospace'>fit = NonlinearModelFit[datalog,{peakr[</span><math id='inf704'><mrow><mi>A</mi><mo mathvariant='normal'>,</mo><mi>B</mi><mo mathvariant='normal'>,</mo><mi>C</mi><mo mathvariant='normal'>,</mo><mi>x</mi></mrow></math><span class='monospace'>],{</span><math id='inf705'><mrow><mrow><mi>A</mi><mo mathvariant='normal'>></mo><mn mathvariant='normal'>0</mn></mrow><mo mathvariant='normal'>,</mo><mrow><mrow><mi>B</mi><mo mathvariant='normal'>></mo><mn mathvariant='normal'>0</mn></mrow><mo mathvariant='normal'>,</mo><mrow><mi>C</mi><mo mathvariant='normal'>></mo><mn mathvariant='normal'>0</mn></mrow></mrow></mrow></math><span class='monospace'>}},</span><br/><span class='monospace'></span><span class='monospace'>{{</span><math id='inf706'><mrow><mi>A</mi><mo mathvariant='normal'>,</mo><msub><mi>A</mi><mn mathvariant='normal'>0</mn></msub></mrow></math><span class='monospace'>},{</span><math id='inf707'><mrow><mi>B</mi><mo mathvariant='normal'>,</mo><msub><mi>B</mi><mn mathvariant='normal'>0</mn></msub></mrow></math><span class='monospace'>},{</span><math id='inf708'><mrow><mi>C</mi><mo mathvariant='normal'>,</mo><msub><mi>C</mi><mn mathvariant='normal'>0</mn></msub></mrow></math><span class='monospace'>}},x,Method->NMinimize];</span><br/><span class='monospace'>fit['ParameterTable']</span></td></tr></tbody></table>
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Table Equations
Definitions of the simulated system | |
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Type | Status |
Protein assembly occupancy | |
Histones | |
Regions of histones |
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<table><thead><tr><th colspan='2' valign='top'>Definitions of the simulated system</th></tr><tr><th valign='top'>Type</th><th valign='top'>Status</th></tr></thead><tbody><tr><td valign='top'>Protein assembly occupancy<math id='inf11'><mstyle displaystyle='true' scriptlevel='0'><mrow><mi>k</mi><mo>∈</mo><mo stretchy='false'>[</mo><mn>1</mn><mo>,</mo><msub><mi>N</mi><mi>p</mi></msub><mo stretchy='false'>]</mo></mrow></mstyle></math></td><td valign='top'><math id='inf12'><mstyle displaystyle='true' scriptlevel='0'><mrow><msub><mi>P</mi><mrow><mi>k</mi></mrow></msub><mo>∈</mo><mrow><mo>{</mo><mrow><mi mathvariant='normal'>u</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>b</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>u</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>d</mi><mo>,</mo><mspace width='thinmathspace'/><mi mathvariant='normal'>b</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>u</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>d</mi></mrow><mo>}</mo></mrow></mrow></mstyle></math></td></tr><tr><td valign='top'>Histones<math id='inf13'><mstyle displaystyle='true'scriptlevel='0'><mrow><mi>i</mi><mo>∈</mo><mo stretchy='false'>[</mo><mn>1</mn><mo>,</mo><mi>N</mi><mo stretchy='false'>]</mo></mrow></mstyle></math></td><td valign='top'><math id='inf14'><mstyle displaystyle='true' scriptlevel='0'><mrow><msub><mi>S</mi><mrow><mi>i</mi></mrow></msub><mo>∈</mo><mrow><mo>{</mo><mrow><mi mathvariant='normal'>m</mi><mi mathvariant='normal'>e</mi><mn>0</mn><mo>,</mo><mspace width='thinmathspace'/><mi mathvariant='normal'>m</mi><mi mathvariant='normal'>e</mi><mn>1</mn><mo>,</mo><mspace width='thinmathspace'/><mi mathvariant='normal'>m</mi><mi mathvariant='normal'>e</mi><mn>2</mn><mo>,</mo><mspace width='thinmathspace'/><mi mathvariant='normal'>m</mi><mi mathvariant='normal'>e</mi><mn>3</mn></mrow><mo>}</mo></mrow></mrow></mstyle></math></td></tr><tr><td valign='top'>Regions of histones</td><td><math id='inf15'><mstyle displaystyle='true' scriptlevel='0'><mrow><msub><mi>R</mi><mrow><mi>m</mi></mrow></msub><mo>=</mo><mrow><mo>{</mo><mtable columnspacing='1em' rowspacing='4pt'><mtr><mtd><mrow><mi mathvariant='normal'>H</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>s</mi><mi mathvariant='normal'>t</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>s</mi></mrow><mo stretchy='false'>[</mo><mn>1</mn><mo>,</mo><mo>.</mo><mo>.</mo><mo>.</mo><mo>,</mo><msub><mi>N</mi><mrow><mi>N</mi><mi>R</mi></mrow></msub><mo stretchy='false'>]</mo><mspace width='thinmathspace'/><mrow><mi mathvariant='normal'>w</mi><mi mathvariant='normal'>h</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>n</mi></mrow><mspace width='thinmathspace'/><mi>m</mi><mo>=</mo><mi>N</mi><mi>R</mi><mspace width='thinmathspace'/><mrow><mo stretchy='false'>(</mo><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>u</mi><mi mathvariant='normal'>c</mi><mi mathvariant='normal'>l</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>a</mi><mi mathvariant='normal'>t</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mspace width='thinmathspace'/><mi mathvariant='normal'>r</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>g</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mo stretchy='false'>)</mo></mrow></mtd></mtr><mtr><mtd><mrow><mi mathvariant='normal'>H</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>s</mi><mi mathvariant='normal'>t</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>s</mi></mrow><mo stretchy='false'>[</mo><msub><mi>N</mi><mrow><mi>N</mi><mi>R</mi></mrow></msub><mo>+</mo><mn>1</mn><mo>,</mo><mo>.</mo><mo>.</mo><mo>.</mo><mo>,</mo><mi>N</mi><mo stretchy='false'>]</mo><mspace width='thinmathspace'/><mrow><mi mathvariant='normal'>w</mi><mi mathvariant='normal'>h</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>n</mi></mrow><mspace width='thinmathspace'/><mi>m</mi><mo>=</mo><mi>B</mi><mspace width='thinmathspace'/><mrow><mo stretchy='false'>(</mo><mi mathvariant='normal'>b</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>d</mi><mi mathvariant='normal'>y</mi><mspace width='thinmathspace'/><mi mathvariant='normal'>r</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>g</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mo stretchy='false'>)</mo></mrow><mo>,</mo><mspace width='thinmathspace'/><msub><mi>N</mi><mi>B</mi></msub><mo>=</mo><mi>N</mi><mo>−</mo><msub><mi>N</mi><mrow><mi>N</mi><mi>R</mi></mrow></msub></mtd></mtr><mtr><mtd><mrow><mrow><mi mathvariant='normal'>H</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>s</mi><mi mathvariant='normal'>t</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>s</mi></mrow><mo stretchy='false'>[</mo><mn>1</mn><mo>,</mo><mo>.</mo><mo>.</mo><mo>.</mo><mo>,</mo><mi>N</mi><mo stretchy='false'>]</mo><mspace width='thinmathspace'/><mrow><mi mathvariant='normal'>w</mi><mi mathvariant='normal'>h</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>n</mi></mrow><mspace width='thinmathspace'/><mi>m</mi><mo>=</mo><mi>L</mi><mspace width='thinmathspace'/><mo stretchy='false'>(</mo><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>n</mi><mi mathvariant='normal'>t</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>r</mi><mi mathvariant='normal'>e</mi><mspace width='thinmathspace'/><mi mathvariant='normal'>r</mi><mi mathvariant='normal'>e</mi><mi mathvariant='normal'>g</mi><mi mathvariant='normal'>i</mi><mi mathvariant='normal'>o</mi><mi mathvariant='normal'>n</mi><mo stretchy='false'>)</mo></mrow><mo>,</mo><mspace width='thinmathspace'/><msub><mi>N</mi><mi>L</mi></msub><mo>=</mo><mi>N</mi></mtd></mtr></mtable><mo fence='true' stretchy='true' symmetric='true'/></mrow></mrow></mstyle></math></td></tr></tbody></table>
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<div class="table-footnote__text"><p>Table with Equations</p></div>
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Table Gene Sequences
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
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Recombinant DNA reagent | synthesized gene - mScarletI | Genscript | actagtggtggttcaggaGTTTCAAAAGGTGAAGCCGTTATTAAAGAATTTATGAGATTCAAGGTTCACATGGAAGGAAGTATGAACGGTCATGAATTTGAGATTGAAGGAGAAGGTGAAGGTAGACCATATGAAGGCACCCAAACAGCTAAATTAAAAGTAACTAAAGGTGGTCCATTACCATTTAGTTGGGATATTTTATCTCCACAATTTATGTATGGTTCACGTGCTTTCAttAAACATCCAGCAGATATTCCAGATTATTATAAACAATCATTTCCAGAAGGTTTTAAATGGGAACGTGTCATGAACTTTGAAGATGGTGGAGCAGTTACAGTCACACAAGATACCTCATTAGAAGATGGTACATTAATATATAAAGTTAAATTACGTGGTACTAATTTTCCACCAGACGGTCCAGTAATGCAAAAAAAAACAATGGGCTGGGAAGCTAGTACAGAACGTTTATATCCTGAAGATGGTGTCCTTAAAGGCGATATAAAAATGGCCTTGAGATTAAAGGATGGTGGTAGGTATTTAGCAGATTTCAAAACCACTTATAAAGCAAAAAAACCAGTTCAAATGCCAGGTGCATATAATGTTGATAGAAAACTTGATATTACCAGTCATAATGAAGATTACACAGTTGTCGAACAATACGAACGTTCTGAAGGTCGTCATAGCACTGGTGGTATGGATGAATTATACAAATAAgctagc | d |
Recombinant DNA reagent | synthesized gene - mNeon | Genscript | actagtggtggttcaggaGTTTCAAAAGGTGAAGCCGTTATTAAAGAATTTATGAGATTCAAGGTTCACATGGAAGGAAGTATGAACGGTCATGAATTTGAGATTGAAGGAGAAGGTGAAGGTAGACCATATGAAGGCACCCAAACAGCTAAATTAAAAGTAACTAAAGGTGGTCCATTACCATTTAGTTGGGATATTTTATCTCCACAATTTATGTATGGTTCACGTGCTTTCAttAAACATCCAGCAGATATTCCAGATTATTATAAACAATCATTTCCAGAAGGTTTTAAATGGGAACGTGTCATGAACTTTGAAGATGGTGGAGCAGTTACAGTCACACAAGATACCTCATTAGAAGATGGTACATTAATATATAAAGTTAAATTACGTGGTACTAATTTTCCACCAGACGGTCCAGTAATGCAAAAAAAAACAATGGGCTGGGAAGCTAGTACAGAACGTTTATATCCTGAAGATGGTGTCCTTAAAGGCGATATAAAAATGGCCTTGAGATTAAAGGATGGTGGTAGGTATTTAGCAGATTTCAAAACCACTTATAAAGCAAAAAAACCAGTTCAAATGCCAGGTGCATATAATGTTGATAGAAAACTTGATATTACCAGTCATAATGAAGATTACACAGTTGTCGAACAATACGAACGTTCTGAAGGTCGTCATAGCACTGGTGGTATGGATGAATTATACAAATAAgctagc |
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<table><thead><tr><th>Reagent type (species) or resource</th><th>Designation</th><th>Source or reference</th><th>Identifiers</th><th>Additional information</th></tr></thead><tbody><tr><td>Recombinant DNA reagent</td><td>synthesized gene - mScarletI</td><td>Genscript</td><td><span class='sequence'>actagtggtggttcaggaGTTTCAAAAGGTGAAGCCGTTATTAAAGAATTTATGAGATTCAAGGTTCACATGGAAGGAAGTATGAACGGTCATGAATTTGAGATTGAAGGAGAAGGTGAAGGTAGACCATATGAAGGCACCCAAACAGCTAAATTAAAAGTAACTAAAGGTGGTCCATTACCATTTAGTTGGGATATTTTATCTCCACAATTTATGTATGGTTCACGTGCTTTCAttAAACATCCAGCAGATATTCCAGATTATTATAAACAATCATTTCCAGAAGGTTTTAAATGGGAACGTGTCATGAACTTTGAAGATGGTGGAGCAGTTACAGTCACACAAGATACCTCATTAGAAGATGGTACATTAATATATAAAGTTAAATTACGTGGTACTAATTTTCCACCAGACGGTCCAGTAATGCAAAAAAAAACAATGGGCTGGGAAGCTAGTACAGAACGTTTATATCCTGAAGATGGTGTCCTTAAAGGCGATATAAAAATGGCCTTGAGATTAAAGGATGGTGGTAGGTATTTAGCAGATTTCAAAACCACTTATAAAGCAAAAAAACCAGTTCAAATGCCAGGTGCATATAATGTTGATAGAAAACTTGATATTACCAGTCATAATGAAGATTACACAGTTGTCGAACAATACGAACGTTCTGAAGGTCGTCATAGCACTGGTGGTATGGATGAATTATACAAATAAgctagc</span></td><td>d</td></tr><tr><td>Recombinant DNA reagent</td><td>synthesized gene - mNeon</td><td>Genscript</td><td><span class='sequence'>actagtggtggttcaggaGTTTCAAAAGGTGAAGCCGTTATTAAAGAATTTATGAGATTCAAGGTTCACATGGAAGGAAGTATGAACGGTCATGAATTTGAGATTGAAGGAGAAGGTGAAGGTAGACCATATGAAGGCACCCAAACAGCTAAATTAAAAGTAACTAAAGGTGGTCCATTACCATTTAGTTGGGATATTTTATCTCCACAATTTATGTATGGTTCACGTGCTTTCAttAAACATCCAGCAGATATTCCAGATTATTATAAACAATCATTTCCAGAAGGTTTTAAATGGGAACGTGTCATGAACTTTGAAGATGGTGGAGCAGTTACAGTCACACAAGATACCTCATTAGAAGATGGTACATTAATATATAAAGTTAAATTACGTGGTACTAATTTTCCACCAGACGGTCCAGTAATGCAAAAAAAAACAATGGGCTGGGAAGCTAGTACAGAACGTTTATATCCTGAAGATGGTGTCCTTAAAGGCGATATAAAAATGGCCTTGAGATTAAAGGATGGTGGTAGGTATTTAGCAGATTTCAAAACCACTTATAAAGCAAAAAAACCAGTTCAAATGCCAGGTGCATATAATGTTGATAGAAAACTTGATATTACCAGTCATAATGAAGATTACACAGTTGTCGAACAATACGAACGTTCTGAAGGTCGTCATAGCACTGGTGGTATGGATGAATTATACAAATAAgctagc</span></td><td></td></tr></tbody></table>
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<ol class="list">
<li class="table-footnote" >
<div class="table-footnote__text"><p>Table with Gene Sequences</p></div>
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</ol>
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Table Inline Images
unwinding | turnover | ||
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# | Chemical drawing | IC50[95%CI];µM | IC50[95%CI];µM |
2 | 2.2 [1.7–2.7] | 3.2 [2.3–4.0] |
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<table><thead><tr><th/><th/><th>unwinding</th><th>turnover</th></tr></thead><tbody><tr><td>#</td><td>Chemical drawing</td><td>IC<sub>50</sub>[95%CI];µM</td><td>IC<sub>50</sub>[95%CI];µM</td></tr><tr><td>2</td><td><img src='https://cdn.elifesciences.org/articles/65339/elife-65339-inf1-v1.jpg'/></td><td>2.2<br/>[1.7–2.7]</td><td>3.2<br/>[2.3–4.0]</td></tr></tbody></table>
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<div class="table-footnote__text"><p>Table with inline images</p> </div>
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Table Long Url
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Software, algorithm | Metamorph | Metamorph v | https://www.moleculardevices.com/products/cellular-imaging-systems/acquisition-and-analysis-software/metamorph-microscopy#gref |
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Factors classically associated with immune functions | ||||
---|---|---|---|---|
Protein | Immune system properties | Nervous system properties | References | |
Antimicrobial peptides(AMPs) |
|
| Hanson et al., 2019;Lezi et al., 2018; |
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<table><thead><tr><th colspan='5' valign='top'>Factors classically associated with immune functions</th></tr><tr valign='bottom'><th colspan='2'>Protein</th><th>Immune system properties</th><th>Nervous system properties</th><th>References</th></tr></thead><tbody><tr valign='top'><td colspan='2'>Antimicrobial peptides(AMPs)</td><td><ol class='listlist--number'><li><p>Secreted by epithelial and phagocytic cells</p></li><li><p>Disrupt microbial membranes leading to destruction of pathogen</p></li></ol></td><td><ol class='listlist--number'><li><p>Antimicrobial in nervous system niches</p></li><li><p>Control chemotaxis of immune cells and astroglia</p></li><li><p>Mediate iron homeostasis</p></li><li><p>Modulate nerve impulses</p></li><li><p>Implicated in aging and neurodegeneration</p></li></ol></td><td><a href='#bib107'>Hanson et al., 2019</a>;<a href='#bib161'>Lezi et al., 2018</a>;<ahref='#bib246'>Su et al., 2010</a>;<ahref='#bib290'>Zasloff, 2002</a></td></tr></tbody></table>
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Factors classically associated with immune functions | ||||
---|---|---|---|---|
Protein | Immune system properties | Nervous system properties | References | |
Antimicrobial peptides(AMPs) |
|
| Hanson et al., 2019;Lezi et al., 2018;Su et al., 2010;Zasloff, 2002 |
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<table><thead><tr><th colspan='5' valign='top'>Factors classically associated with immune functions</th></tr><tr valign='bottom'><th colspan='2'>Protein</th><th>Immune system properties</th><th>Nervous system properties</th><th>References</th></tr></thead><tbody><tr valign='top'><td colspan='2'>Antimicrobial peptides(AMPs)</td><td><ul class='listlist--bullet'><li><p>Secreted by epithelial and phagocyticcells</p></li><li><p>Disrupt microbial membranes leading to destruction of pathogen</p></li></ul></td><td><ul class='listlist--bullet'><li><p>Antimicrobial in nervous system niches</p></li><li><p>Control chemotaxis of immune cells and astroglia</p></li><li><p>Mediate iron homeostasis</p></li><li><p>Modulate nerve impulses</p></li><li><p>Implicated in aging and neurodegeneration</p></li></ul></td><td><a href='#bib107'>Hanson et al., 2019</a>;<a href='#bib161'>Lezi et al., 2018</a>;<a href='#bib246'>Su et al., 2010</a>;<a href='#bib290'>Zasloff, 2002</a></td></tr></tbody></table>
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<input type="checkbox" name="checkboxes[]" value="checkbox_5"
id="checkbox_id_5"
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
/>
<span class="checkbox__item">Checkbox 5</span>
</label>
</li>
</ul>
</li>
</ul>
</div>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Checkboxes Info
-
Children detected!
HTML
<div class="form-item">
<div class="form-item__title">Checkboxes</div>
<div class="checkboxes" id="checkboxes1">
<ul class="checkboxes__list">
<li class="checkboxes__list_item">
<label class="checkboxes__item_label">
<input type="checkbox" name="checkboxes[]" value="checkbox_1"
id="checkbox_id_1"
checked
aria-describedby="idOfTheMessageGroup"
/>
<span class="checkbox__item">Checkbox 1 Checkbox 1 Checkbox 1 Checkbox 1</span>
</label>
</li>
<li class="checkboxes__list_item">
<label class="checkboxes__item_label">
<input type="checkbox" name="checkboxes[]" value="checkbox_2"
id="checkbox_id_2"
aria-describedby="idOfTheMessageGroup"
/>
<span class="checkbox__item">Checkbox 2</span>
</label>
</li>
<li class="checkboxes__list_item">
<label class="checkboxes__item_label">
<input type="checkbox" name="checkboxes[]" value="checkbox_3"
id="checkbox_id_3"
aria-describedby="idOfTheMessageGroup"
/>
<span class="checkbox__item">Checkbox 3</span>
</label>
</li>
<li class="checkboxes__list_item">
<div class="form-item__sub_title">Children detected!</div>
<ul class="checkboxes__children_list">
<li class="checkboxes__children_list_item">
<label class="checkboxes__item_label">
<input type="checkbox" name="checkboxes[]" value="checkbox_4"
id="checkbox_id_4"
aria-describedby="idOfTheMessageGroup"
/>
<span class="checkbox__item">Checkbox 4</span>
</label>
</li>
<li class="checkboxes__children_list_item">
<label class="checkboxes__item_label">
<input type="checkbox" name="checkboxes[]" value="checkbox_5"
id="checkbox_id_5"
aria-describedby="idOfTheMessageGroup"
/>
<span class="checkbox__item">Checkbox 5</span>
</label>
</li>
</ul>
</li>
</ul>
</div>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
</div>
</div>
Form Field Info Link
HTML
<div class="form-field-info-link-wrapper">
<a class="form-field-info-link" href="/link-to-privacy-notice">Privacy notice</a>
</div>
Form Field Info Link Left
HTML
<div class="form-field-info-link-wrapper form-field-info-link-wrapper--left">
<a class="form-field-info-link" href="/link-to-privacy-notice">Privacy notice</a>
</div>
Hidden Field
HTML
<input type="hidden" name="hidden" value="hello">
Honeypot
HTML
<div class="form-item visuallyhidden" aria-hidden="true">
<label for="secret_field" class="form-item__label">Please don't complete this field</label>
<input
type="email"
class="text-field text-field--email"
id="secret_field"
name="secret_field"
tabindex="-1"
/>
</div>
Select
HTML
<div class="form-item">
<label for="select1"
class="form-item__label">
Select
</label>
<select class="select"
id="select1"
name="select1"
>
<option value="2016" >2016</option>
<option value="2015" selected>2015</option>
<option value="2014" >2014</option>
</select>
</div>
Select Error
HTML
<div class="form-item form-item--invalid">
<label for="select2"
class="form-item__label">
Select error
</label>
<select class="select select--invalid"
id="select2"
name="select2"
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
>
<option value="2016" >2016</option>
<option value="2015" selected>2015</option>
<option value="2014" >2014</option>
</select>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Select Info Error
HTML
<div class="form-item form-item--invalid">
<label for="select2"
class="form-item__label">
Select error with additional info
</label>
<select class="select select--invalid"
id="select2"
name="select2"
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
>
<option value="2016" >2016</option>
<option value="2015" selected>2015</option>
<option value="2014" >2014</option>
</select>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Select Info
HTML
<div class="form-item">
<label for="select2"
class="form-item__label">
Select with additional info
</label>
<select class="select"
id="select2"
name="select2"
aria-describedby="idOfTheMessageGroup"
>
<option value="2016" >2016</option>
<option value="2015" selected>2015</option>
<option value="2014" >2014</option>
</select>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
</div>
</div>
Text Area
HTML
<div class="form-item">
<label
for="comment1"
class="form-item__label">
Add a comment
</label>
<textarea
type=""
class="text-field text-field--textarea"
id="comment1"
name="comment"
autofocus
cols="30"
rows="2"
required="required"
form="some_form_id"
placeholder="Type text to leave a comment"
></textarea>
</div>
Text Area Error
HTML
<div class="form-item form-item--invalid">
<label
for="comment1"
class="form-item__label">
Text area error
</label>
<textarea
type=""
class="text-field text-field--textarea text-field--invalid"
id="comment1"
name="comment"
autofocus
cols="30"
rows="2"
required="required"
form="some_form_id"
placeholder="Type text to leave a comment"
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
></textarea>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Text Area Info Error
HTML
<div class="form-item form-item--invalid">
<label
for="comment1"
class="form-item__label">
Text area error with additional info
</label>
<textarea
type=""
class="text-field text-field--textarea text-field--invalid"
id="comment1"
name="comment"
autofocus
cols="30"
rows="2"
required="required"
form="some_form_id"
placeholder="Type text to leave a comment"
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
></textarea>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Text Area Info
HTML
<div class="form-item">
<label
for="comment1"
class="form-item__label">
Text area with additional info
</label>
<textarea
type=""
class="text-field text-field--textarea"
id="comment1"
name="comment"
autofocus
cols="30"
rows="2"
required="required"
form="some_form_id"
placeholder="Type text to leave a comment"
aria-describedby="idOfTheMessageGroup"
></textarea>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
</div>
</div>
Text Field
HTML
<div class="form-item">
<div class="form-item__label_container">
<label
for="emailAddress1"
class="form-item__label">
Email Address
</label>
</div>
<input
type="email"
class="text-field text-field--email"
id="emailAddress1"
name="emailAddress"
autofocus
>
</div>
Text Field Error
HTML
<div class="form-item form-item--invalid">
<div class="form-item__label_container">
<label
for="name4"
class="form-item__label">
Error text field
</label>
</div>
<input
type="text"
class="text-field text-field--text text-field--invalid"
id="name4"
name="name"
autofocus
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Text Field Hidden Until Checked With Checkbox Id
HTML
<div class="form-item" data-behaviour="HiddenUntilChecked" data-checkbox-id="other-checkbox-id">
<div class="form-item__label_container">
<label
for="other1"
class="form-item__label visuallyhidden">
Other
</label>
</div>
<input
type="text"
class="text-field text-field--text"
id="other1"
name="other"
autofocus
>
</div>
Text Field Hidden Until Checked With Value
HTML
<div class="form-item" data-behaviour="HiddenUntilChecked">
<div class="form-item__label_container">
<label
for="other1"
class="form-item__label visuallyhidden">
Other
</label>
</div>
<input
type="text"
class="text-field text-field--text"
id="other1"
name="other"
value="value"
>
</div>
Text Field Hidden Until Checked
HTML
<div class="form-item" data-behaviour="HiddenUntilChecked">
<div class="form-item__label_container">
<label
for="other1"
class="form-item__label visuallyhidden">
Other
</label>
</div>
<input
type="text"
class="text-field text-field--text"
id="other1"
name="other"
autofocus
>
</div>
Text Field Info Error
HTML
<div class="form-item form-item--invalid">
<div class="form-item__label_container">
<label
for="name4"
class="form-item__label">
Error text field with additional info
</label>
</div>
<input
type="text"
class="text-field text-field--text text-field--invalid"
id="name4"
name="name"
autofocus
aria-describedby="idOfTheMessageGroup" aria-invalid="true"
>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
<div class="form-item__message form-item__message--invalid">Please provide a valid value</div>
</div>
</div>
Text Field Info
HTML
<div class="form-item">
<div class="form-item__label_container">
<label
for="name3"
class="form-item__label">
Text field with info
</label>
</div>
<input
type="text"
class="text-field text-field--text"
id="name3"
name="name"
autofocus
aria-describedby="idOfTheMessageGroup"
>
<div id="idOfTheMessageGroup">
<div class="form-item__message form-item__message--info">You may wish to consider this</div>
</div>
</div>
Text Field With Form Field Info Link
HTML
<div class="form-item">
<div class="form-item__label_container">
<label
for="emailAddress1"
class="form-item__label">
Email Address
</label>
<div class="form-field-info-link-wrapper">
<a class="form-field-info-link" href="/privacy-notice">Privacy notice</a>
</div>
</div>
<input
type="email"
class="text-field text-field--email"
id="emailAddress1"
name="emailAddress"
autofocus
>
</div>
Reference
HTML
<div class="reference">
<div class="reference__title">[Do not use this base pattern directly: see the following variants of this pattern for usage]</div>
<div class="doi__reference-spacing"></div>
</div>
Reference Book Chapter
- Feldman JL
- Del Negro C
- Gray PA
HTML
<div class="reference">
<div class="reference__label">Book</div>
<ol class="reference__authors_list">
<li class="reference__author">
Feldman JL</li>
<li class="reference__author">
Del Negro C</li>
<li class="reference__author">
Gray PA</li>
</ol>
<span class="reference__authors_list_suffix">(2013)</span>
<a href="https://doi.org/10.1146/annurev-physiol-040510-130049" class="reference__title">Understanding the rhythm of breathing: so near, yet so far</a>
<div class="reference__origin">In: Julius D, Clapham DE, editors. <i>Annual Review of Physiology</i> <b>75</b>:423–452.</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
<a href="https://doi.org/10.1146/annurev-physiol-040510-130049" class="doi__link">
https://doi.org/10.1146/annurev-physiol-040510-130049
</a>
</span>
</div>
Reference Book
- Geoffroy Saint-Hilaire E.
HTML
<div class="reference">
<div class="reference__label">Book</div>
<ol class="reference__authors_list">
<li class="reference__author">
Geoffroy Saint-Hilaire E.</li>
</ol>
<span class="reference__authors_list_suffix">(1818)</span>
<div class="reference__title">Philosophie Anatomique</div>
<div class="reference__origin">Paris: Méquignon-Marvis</div>
<div class="doi__reference-spacing"></div>
</div>
Reference Clinical Trial
HTML
<div class="reference">
<div class="reference__label">Clinical Trial</div>
<div class="reference__title">Scripps Wired for Health Study (Registration: 000000)</div>
<div class="reference__origin">Scripps Translational Science Institute (sponsor) (2015)</div>
<div class="doi__reference-spacing"></div>
</div>
Reference Conference With Doi
- Jain BV
- Bollman B
- Richardson M
- Berger DR
- Helmstaedter MN
- Briggman KL
- Denk W
- Bowden JB
- Mendenhall JM
- Abraham WC
- Harris KM
- Kasthuri N
- Hayworth KJ
- Schalek R
- Tapia JC
- Lichtman JW
- Seung HS
HTML
<div class="reference">
<div class="reference__label">Conference</div>
<ol class="reference__authors_list">
<li class="reference__author">
Jain BV</li>
<li class="reference__author">
Bollman B</li>
<li class="reference__author">
Richardson M</li>
<li class="reference__author">
Berger DR</li>
<li class="reference__author">
Helmstaedter MN</li>
<li class="reference__author">
Briggman KL</li>
<li class="reference__author">
Denk W</li>
<li class="reference__author">
Bowden JB</li>
<li class="reference__author">
Mendenhall JM</li>
<li class="reference__author">
Abraham WC</li>
<li class="reference__author">
Harris KM</li>
<li class="reference__author">
Kasthuri N</li>
<li class="reference__author">
Hayworth KJ</li>
<li class="reference__author">
Schalek R</li>
<li class="reference__author">
Tapia JC</li>
<li class="reference__author">
Lichtman JW</li>
<li class="reference__author">
Seung HS</li>
</ol>
<span class="reference__authors_list_suffix">(2010)</span>
<a href="https://doi.org/10.1038/365833a0" class="reference__title">Boundary learning by optimization with topological constraints</a>
<div class="reference__origin">Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
<a href="https://doi.org/10.1038/365833a0" class="doi__link">
https://doi.org/10.1038/365833a0
</a>
</span>
</div>
Reference Conference With Link
- Jain BV
- Bollman B
- Richardson M
- Berger DR
- Helmstaedter MN
- Briggman KL
- Denk W
- Bowden JB
- Mendenhall JM
- Abraham WC
- Harris KM
- Kasthuri N
- Hayworth KJ
- Schalek R
- Tapia JC
- Lichtman JW
- Seung HS
HTML
<div class="reference">
<div class="reference__label">Conference</div>
<ol class="reference__authors_list">
<li class="reference__author">
Jain BV</li>
<li class="reference__author">
Bollman B</li>
<li class="reference__author">
Richardson M</li>
<li class="reference__author">
Berger DR</li>
<li class="reference__author">
Helmstaedter MN</li>
<li class="reference__author">
Briggman KL</li>
<li class="reference__author">
Denk W</li>
<li class="reference__author">
Bowden JB</li>
<li class="reference__author">
Mendenhall JM</li>
<li class="reference__author">
Abraham WC</li>
<li class="reference__author">
Harris KM</li>
<li class="reference__author">
Kasthuri N</li>
<li class="reference__author">
Hayworth KJ</li>
<li class="reference__author">
Schalek R</li>
<li class="reference__author">
Tapia JC</li>
<li class="reference__author">
Lichtman JW</li>
<li class="reference__author">
Seung HS</li>
</ol>
<span class="reference__authors_list_suffix">(2010)</span>
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__title">Boundary learning by optimization with topological constraints</a>
<div class="reference__origin">Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)</div>
<div class="doi__reference-spacing"></div>
<div class="reference__link-outer">
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__link">https://www.gov.uk/government/publications/educational-excellence-everywhere</a>
</div>
</div>
Reference Conference
- Jain BV
- Bollman B
- Richardson M
- Berger DR
- Helmstaedter MN
- Briggman KL
- Denk W
- Bowden JB
- Mendenhall JM
- Abraham WC
- Harris KM
- Kasthuri N
- Hayworth KJ
- Schalek R
- Tapia JC
- Lichtman JW
- Seung HS
HTML
<div class="reference">
<div class="reference__label">Conference</div>
<ol class="reference__authors_list">
<li class="reference__author">
Jain BV</li>
<li class="reference__author">
Bollman B</li>
<li class="reference__author">
Richardson M</li>
<li class="reference__author">
Berger DR</li>
<li class="reference__author">
Helmstaedter MN</li>
<li class="reference__author">
Briggman KL</li>
<li class="reference__author">
Denk W</li>
<li class="reference__author">
Bowden JB</li>
<li class="reference__author">
Mendenhall JM</li>
<li class="reference__author">
Abraham WC</li>
<li class="reference__author">
Harris KM</li>
<li class="reference__author">
Kasthuri N</li>
<li class="reference__author">
Hayworth KJ</li>
<li class="reference__author">
Schalek R</li>
<li class="reference__author">
Tapia JC</li>
<li class="reference__author">
Lichtman JW</li>
<li class="reference__author">
Seung HS</li>
</ol>
<span class="reference__authors_list_suffix">(2010)</span>
<div class="reference__title">Boundary learning by optimization with topological constraints</div>
<div class="reference__origin">Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)</div>
<div class="doi__reference-spacing"></div>
</div>
Reference Data With Doi
- Bouveret R
- Bouveret R
- Schonrock N
- Ramialison M
- Doan T
- de Jong D
- Bondue A
- Kaur G
- Mohamed S
- Fonoudi H
- Chen C
- Wouters M
- Bhattacharya S
- Plachta N
- Dunwoodie SL
- Chapman G
- Blanpain C
- Harvey RP
HTML
<div class="reference">
<div class="reference__label">Data</div>
<ol class="reference__authors_list">
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Schonrock N</li>
<li class="reference__author">
Ramialison M</li>
<li class="reference__author">
Doan T</li>
<li class="reference__author">
de Jong D</li>
<li class="reference__author">
Bondue A</li>
<li class="reference__author">
Kaur G</li>
<li class="reference__author">
Mohamed S</li>
<li class="reference__author">
Fonoudi H</li>
<li class="reference__author">
Chen C</li>
<li class="reference__author">
Wouters M</li>
<li class="reference__author">
Bhattacharya S</li>
<li class="reference__author">
Plachta N</li>
<li class="reference__author">
Dunwoodie SL</li>
<li class="reference__author">
Chapman G</li>
<li class="reference__author">
Blanpain C</li>
<li class="reference__author">
Harvey RP</li>
</ol>
<span class="reference__authors_list_suffix">(2015)</span>
<a href="https://doi.org/10.1038/365833a0" class="reference__title">NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets</a>
<div class="reference__origin">NCBI Gene Expression Omnibus.</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
<a href="https://doi.org/10.1038/365833a0" class="doi__link">
https://doi.org/10.1038/365833a0
</a>
</span>
<ul class="reference__abstracts">
<li class="reference__abstract">
<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
</li>
<li class="reference__abstract">
<a href="https://google.co.uk" class="reference__abstract_link">Google Scholar</a>
</li>
</ul>
</div>
Reference Data With Link
- Bouveret R
- Bouveret R
- Schonrock N
- Ramialison M
- Doan T
- de Jong D
- Bondue A
- Kaur G
- Mohamed S
- Fonoudi H
- Chen C
- Wouters M
- Bhattacharya S
- Plachta N
- Dunwoodie SL
- Chapman G
- Blanpain C
- Harvey RP
HTML
<div class="reference">
<div class="reference__label">Data</div>
<ol class="reference__authors_list">
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Schonrock N</li>
<li class="reference__author">
Ramialison M</li>
<li class="reference__author">
Doan T</li>
<li class="reference__author">
de Jong D</li>
<li class="reference__author">
Bondue A</li>
<li class="reference__author">
Kaur G</li>
<li class="reference__author">
Mohamed S</li>
<li class="reference__author">
Fonoudi H</li>
<li class="reference__author">
Chen C</li>
<li class="reference__author">
Wouters M</li>
<li class="reference__author">
Bhattacharya S</li>
<li class="reference__author">
Plachta N</li>
<li class="reference__author">
Dunwoodie SL</li>
<li class="reference__author">
Chapman G</li>
<li class="reference__author">
Blanpain C</li>
<li class="reference__author">
Harvey RP</li>
</ol>
<span class="reference__authors_list_suffix">(2015)</span>
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__title">NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets</a>
<div class="reference__origin">NCBI Gene Expression Omnibus.</div>
<div class="doi__reference-spacing"></div>
<div class="reference__link-outer">
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__link">https://www.gov.uk/government/publications/educational-excellence-everywhere</a>
</div>
<ul class="reference__abstracts">
<li class="reference__abstract">
<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
</li>
<li class="reference__abstract">
<a href="https://google.co.uk" class="reference__abstract_link">Google Scholar</a>
</li>
</ul>
</div>
Reference Data
- Bouveret R
- Bouveret R
- Schonrock N
- Ramialison M
- Doan T
- de Jong D
- Bondue A
- Kaur G
- Mohamed S
- Fonoudi H
- Chen C
- Wouters M
- Bhattacharya S
- Plachta N
- Dunwoodie SL
- Chapman G
- Blanpain C
- Harvey RP
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Bouveret R</li>
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Bouveret R</li>
<li class="reference__author">
Schonrock N</li>
<li class="reference__author">
Ramialison M</li>
<li class="reference__author">
Doan T</li>
<li class="reference__author">
de Jong D</li>
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Bondue A</li>
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Kaur G</li>
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Mohamed S</li>
<li class="reference__author">
Fonoudi H</li>
<li class="reference__author">
Chen C</li>
<li class="reference__author">
Wouters M</li>
<li class="reference__author">
Bhattacharya S</li>
<li class="reference__author">
Plachta N</li>
<li class="reference__author">
Dunwoodie SL</li>
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Chapman G</li>
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Blanpain C</li>
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Harvey RP</li>
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<span class="reference__authors_list_suffix">(2015)</span>
<div class="reference__title">NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets</div>
<div class="reference__origin">NCBI Gene Expression Omnibus. Series accession number <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44902">GSE44902</a></div>
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Reference Journal Article With Doi Without Link
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
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<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
</ol>
<span class="reference__authors_list_suffix">(1993)</span>
<div class="reference__title">Oldest <i>Homo</i> and Pliocene biogeography of the Malawi rift</div>
<div class="reference__origin"><i>Nature</i> <strong>365</strong>:833–836.</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
https://doi.org/10.1038/365833a0
</span>
<ul class="reference__abstracts">
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<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
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<a href="https://google.co.uk" class="reference__abstract_link">Google Scholar</a>
</li>
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Reference Journal Article With Doi
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
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<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
</ol>
<span class="reference__authors_list_suffix">(1993)</span>
<a href="https://doi.org/10.1038/365833a0" class="reference__title">Oldest <i>Homo</i> and Pliocene biogeography of the Malawi rift</a>
<div class="reference__origin"><i>Nature</i> <strong>365</strong>:833–836.</div>
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<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
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<a href="https://google.co.uk" class="reference__abstract_link">Google Scholar</a>
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Reference Journal Article With Link
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
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- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
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<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
</ol>
<span class="reference__authors_list_suffix">(1993)</span>
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__title">Oldest <i>Homo</i> and Pliocene biogeography of the Malawi rift</a>
<div class="reference__origin"><i>Nature</i> <strong>365</strong>:833–836.</div>
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<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
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Reference Patent
- Patterson JB
- Lonergan DG
- Flynn GA
- Qingpeng Z
- Pallai PV
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<li class="reference__author">
Patterson JB</li>
<li class="reference__author">
Lonergan DG</li>
<li class="reference__author">
Flynn GA</li>
<li class="reference__author">
Qingpeng Z</li>
<li class="reference__author">
Pallai PV</li>
</ol>
<span class="reference__authors_list_suffix">(2011)</span>
<div class="reference__title">IRE-1alpha inhibitors (US20100941530)</div>
<div class="reference__origin">Mankind Corp, United States patent, United States</div>
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Reference Periodical
- The Economist
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<a href="https://www.economist.com/news/briefing/21588057-scientists-think-science-self-correcting-alarming-degree-it-not-trouble" class="reference__title">Unreliable research: Trouble at the lab</a>
<div class="reference__origin"><i>The Economist</i>, p26–30.</div>
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<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
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Reference Preprint With Doi
- Paris M
- Kaplan M
- Li XY
- Villalta JE
- Lott SE
- Eisen MB
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<li class="reference__author">
Li XY</li>
<li class="reference__author">
Villalta JE</li>
<li class="reference__author">
Lott SE</li>
<li class="reference__author">
Eisen MB</li>
</ol>
<span class="reference__authors_list_suffix">(2013)</span>
<a href="https://doi.org/10.1038/365833a0" class="reference__title">Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression</a>
<div class="reference__origin">arXiv</div>
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<a href="https://doi.org/10.1038/365833a0" class="doi__link">
https://doi.org/10.1038/365833a0
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Reference Preprint With Link
- Paris M
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Paris M</li>
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Kaplan M</li>
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Li XY</li>
<li class="reference__author">
Villalta JE</li>
<li class="reference__author">
Lott SE</li>
<li class="reference__author">
Eisen MB</li>
</ol>
<span class="reference__authors_list_suffix">(2013)</span>
<a href="https://arxiv.org/abs/1303.0216" class="reference__title">Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression</a>
<div class="reference__origin">arXiv</div>
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<a href="https://arxiv.org/abs/1303.0216" class="reference__link">https://arxiv.org/abs/1303.0216</a>
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Reference Report
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<span class="reference__authors_list_suffix">(2016)</span>
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__title">Educational Excellence Everywhere</a>
<div class="reference__origin">London: HMSO</div>
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<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__link">https://www.gov.uk/government/publications/educational-excellence-everywhere</a>
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Reference Software
- DeLano W. L.
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DeLano W. L.</li>
</ol>
<span class="reference__authors_list_suffix">(2002)</span>
<div class="reference__title">The Pymol Molecular Graphics System</div>
<div class="reference__origin">DeLano Scientific, Palo Alto, CA</div>
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</div>
Reference Thesis
- Assaf M.
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Assaf M.</li>
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<span class="reference__authors_list_suffix">(2010)</span>
<a href="https://doi.org/10.1371/journal.pgen.0030218" class="reference__title">Theory of large fluctuations in stochastic populations</a>
<div class="reference__origin">Hebrew University of Jerusalem</div>
<div class="doi__reference-spacing"></div>
<div class="reference__link-outer">
<a href="https://doi.org/10.1371/journal.pgen.0030218" class="reference__link">https://doi.org/10.1371/journal.pgen.0030218</a>
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Crane T</li>
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<span class="reference__authors_list_suffix">(2005)</span>
<a href="http://plato.stanford.edu/entries/perception-problem/" class="reference__title">The Problem of Perception</a>
<div class="reference__origin">The Stanford Encyclopedia of Philosophy</div>
<div class="doi__reference-spacing"></div>
<div class="reference__link-outer">
<a href="http://plato.stanford.edu/entries/perception-problem/" class="reference__link">http://plato.stanford.edu/entries/perception-problem/</a>
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Assessment Terms Article
- Valuable
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<h4 class="about-profile__name">Randy Scheckman</h4>
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<div class="article-download-links-list__intro"><div class="reference"> <ol class="reference__authors_list"> <li class="reference__author"> Lee R Berger</li> <li class="reference__author"> John Hawks</li> <li class="reference__author"> Darryl J de Ruiter</li> <li class="reference__author"> Steven E Churchill</li> <li class="reference__author"> Peter Schmid</li> <li class="reference__author"> Lucas K Delezene</li> <li class="reference__author"> Tracy L Kivell</li> <li class="reference__author"> Heather M Garvin</li> <li class="reference__author"> Scott A Williams</li> <li class="reference__author"> Jeremy M DeSilva</li> <li class="reference__author"> Matthew M Skinner</li> <li class="reference__author"> Charles M Musiba</li> <li class="reference__author"> Noel Cameron</li> <li class="reference__author"> Trenton W Holliday</li> <li class="reference__author"> William Harcourt-Smith</li> <li class="reference__author"> Rebecca R Ackermann</li> <li class="reference__author"> Markus Bastir</li> <li class="reference__author"> Barry Bogin</li> <li class="reference__author"> Debra Bolter</li> <li class="reference__author"> Juliet Brophy</li> <li class="reference__author"> Zachary D Cofran</li> <li class="reference__author"> Kimberly A Congdon</li> <li class="reference__author"> Andrew S Deane</li> <li class="reference__author"> Mana Dembo</li> <li class="reference__author"> Michelle Drapeau</li> <li class="reference__author"> Marina C Elliott</li> <li class="reference__author"> Elen M Feuerriegel</li> <li class="reference__author"> Daniel Garcia-Martinez</li> <li class="reference__author"> David J Green</li> <li class="reference__author"> Alia Gurtov</li> <li class="reference__author"> Joel D Irish</li> <li class="reference__author"> Ashley Kruger</li> <li class="reference__author"> Myra F Laird</li> <li class="reference__author"> Damiano Marchi</li> <li class="reference__author"> Marc R Meyer</li> <li class="reference__author"> Shahed Nalla</li> <li class="reference__author"> Enquye W Negash</li> <li class="reference__author"> Caley M Orr</li> <li class="reference__author"> Davorka Radovcic</li> <li class="reference__author"> Lauren Schroeder</li> <li class="reference__author"> Jill E Scott</li> <li class="reference__author"> Zachary Throckmorton</li> <li class="reference__author"> Matthew W Tocheri</li> <li class="reference__author"> Caroline VanSickle</li> <li class="reference__author"> Christopher S Walker</li> <li class="reference__author"> Pianpian Wei</li> <li class="reference__author"> Bernhard Zipfel</li> </ol> <span class="reference__authors_list_suffix">(2015)</span> <div class="reference__title"><i>Homo naledi</i>, a new species of the genus <i>Homo</i> from the Dinaledi Chamber, South Africa</div> <div class="reference__origin"><i>eLife</i> <b>4</b>:e09560.</div> <span class="doi"> https://doi.org/10.7554/eLife.09560 </span></div></div>
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Article Section Kitchen Sink
The Kitchen Sink
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HTML and CSS are our tools. Mauris a ante. Suspendisse quam sem, consequat at, commodo vitae, TAATAAGGAAGAACTGCTTATTCTTAATTATTTCTACCTACTAAACTAACTAATTATCAACAAATATCATCTATTTAATAGTATATCATCACATGCGGTGTAAGAGGATGACATAAAGATTGAGAAACAGTCATCCAGTCTAATGGAAGCTCAAATGCAAGGGCTGATAATGTAATAGGATAATGAATGACAACGTATAAAAGGAAAGAAGATAAAGCAATATTATTTTGTAGAATTATCGATTCCCTTTTGTGGATCCCTATATCCTCGAGGAGAA feugiat in, nunc. Morbi imperdiet augue quis tellus. Praesent mattis, massa quis luctus fermentum, turpis mi volutpat justo, eu volutpat enim diam eget metus. To copy a file type COPY filename
. Dinner’s at 5:00. Let’s make that 7. This text has been struck.
List Types
Definition List
- Definition List Title
- This is a definition list division.
- Definition
- An exact statement or description of the nature, scope, or meaning of something: our definition of what constitutes poetry.
Ordered List
- List Item 1
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- Nested list item A
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- List Item 3
Unordered List
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Table
Table Header 1 | Table Header 2 | Table Header 3 | Table Header 4 |
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This is purple. | This is red. | This is pink. | This is grey. |
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“Beware the Jabberwock, my son! The jaws that bite, the claws that catch! Beware the Jubjub bird, and shun The frumious Bandersnatch!”
Code
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block. Because we have more specific typographic needs for code, we’ll specify Consolas and Monaco ahead of the browser-defined monospace font.
#container {
float: left;
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Blockquotes
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Good afternoon, gentlemen. I am a HAL 9000 computer. I became operational at the H.A.L. plant in Urbana, Illinois on the 12th of January 1992. My instructor was Mr. Langley, and he taught me to sing a song. If you’d like to hear it I can sing it for you.
— Citing HAL 9000
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<hr />
This is not wrapped in a paragraph.<br>
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<hr />
<h2>List Types</h2>
<h3>Definition List</h3>
<dl>
<dt>Definition List Title</dt>
<dd>This is a definition list division.</dd>
<dt>Definition</dt>
<dd>An exact statement or description of the nature, scope, or meaning of something: <em>our definition of what constitutes poetry.</em></dd>
</dl>
<h3>Ordered List</h3>
<ol>
<li>List Item 1</li>
<li>List Item 2
<ol>
<li>Nested list item A</li>
<li>Nested list item B</li>
</ol>
</li>
<li>List Item 3</li>
</ol>
<h3>Unordered List</h3>
<ul>
<li>List Item 1</li>
<li>List Item 2
<ul>
<li>Nested list item A</li>
<li>Nested list item B</li>
</ul>
</li>
<li>List Item 3</li>
</ul>
<hr />
<h2>Table</h2>
<table>
<thead>
<th>Table Header 1</th>
<th>Table Header 2</th>
<th>Table Header 3</th>
<th>Table Header 4</th>
</thead>
<tbody>
<tr>
<td>Division 1</td>
<td>Division 2</td>
<td>Division 3</td>
<td>Division 4</td>
</tr>
<tr class="even">
<td>Division 1</td>
<td>Division 2</td>
<td>Division 3</td>
<td>Division 4</td>
</tr>
<tr>
<td>Division 1</td>
<td>Division 2</td>
<td><a href="#">Division 3 with link</a></td>
<td><a href="#">Division 4 with link</a></td>
</tr>
<tr>
<td class="author-callout-style-b1">This is blue.</td>
<td class="author-callout-style-b2">This is green.</td>
<td class="author-callout-style-b3">This is orange.</td>
<td class="author-callout-style-b4">This is yellow.</td>
</tr>
<tr>
<td class="author-callout-style-b5">This is purple.</td>
<td class="author-callout-style-b6">This is red.</td>
<td class="author-callout-style-b7">This is pink.</td>
<td class="author-callout-style-b8">This is grey.</td>
</tr>
</tbody>
</table>
<hr />
<h2>Preformatted Text</h2>
<p>Typographically, preformatted text is not the same thing as code. Sometimes, a faithful execution of the text requires preformatted text that may not have anything to do with code. Most browsers use Courier and that’s a good default — with one slight adjustment, Courier 10 Pitch over regular Courier for Linux users. For example:</p>
<pre>“Beware the Jabberwock, my son!
The jaws that bite, the claws that catch!
Beware the Jubjub bird, and shun
The frumious Bandersnatch!”</pre>
<h3>Code</h3>
<p>Code can be presented inline, like <code><?php bloginfo('stylesheet_url'); ?></code>, or within a <code><pre></code> block. Because we have more specific typographic needs for code, we’ll specify Consolas and Monaco ahead of the browser-defined monospace font.</p>
<pre>
<code>#container {
float: left;
margin: 0 -240px 0 0;
width: 100%;
}</code>
</pre>
<hr />
<h2>Blockquotes</h2>
<p>Let’s keep it simple. Italics are good to help set it off from the body text. Be sure to style the citation.</p>
<blockquote>
<p>Good afternoon, gentlemen. I am a HAL 9000 computer. I became operational at the H.A.L. plant in Urbana, Illinois on the 12th of January 1992. My instructor was Mr. Langley, and he taught me to sing a song. If you’d like to hear it I can sing it for you.</p>
<p><cite>— Citing <a href="http://en.wikipedia.org/wiki/HAL_9000">HAL 9000</a></cite></p>
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<p>And here’s a bit of trailing text.</p>
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Article Section Assessment
Assessment
This valuable paper informs on the role of type I PRMTs in programming muscle stem cell identification. The evidence presented is mostly solid, with some weaknesses in the evidence regarding the proposed mechanism. The paper will be of particular interest to those who study skeletal muscle satellite cell biology.
https://doi.org/10.7554/eLife.62927.sa1- Landmark
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- Exceptional
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During the peer-review process the editor and reviewers write an eLife Assessment that summarises the significance of the findings reported in the article (on a scale ranging from landmark to useful) and the strength of the evidence (on a scale ranging from exceptional to inadequate). Learn more about eLife Assessments
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<p>This <b>valuable</b> paper informs on the role of type I PRMTs in programming muscle stem cell identification. The evidence presented is mostly <b>solid</b>, with some weaknesses in the evidence regarding the proposed mechanism. The paper will be of particular interest to those who study skeletal muscle satellite cell biology.</p>
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<a href="https://doi.org/10.7554/eLife.62927.sa1" class="doi__link">
https://doi.org/10.7554/eLife.62927.sa1
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<div class="term-title">Significance of the findings:</div>
<div class="term-description" aria-label="eLife assessments use a common vocabulary to describe significance. The term chosen for this paper is:"><b>Valuable</b>: Contains findings that have theoretical or practical implications for a subfield.</div>
<ul class="terms" aria-label="The following is a list terms editors can choose from">
<li class="term">Landmark</li>
<li class="term">Fundamental</li>
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<li class="term term-highlighted">Valuable</li>
<li class="term">Useful</li>
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<div class="term-title">Strength of evidence:</div>
<div class="term-description" aria-label="eLife assessments use a common vocabulary to describe strength of evidence. The term or terms chosen for this paper is:"><b>Solid</b>: Methods, data and analyses broadly support the claims with only minor weaknesses.</div>
<ul class="terms" aria-label="The following is a list terms editors can choose from">
<li class="term">Exceptional</li>
<li class="term">Compelling</li>
<li class="term">Convincing</li>
<li class="term term-highlighted">Solid</li>
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<p class="assessment__summary">During the peer-review process the editor and reviewers write an eLife Assessment that summarises the significance of the findings reported in the article (on a scale ranging from landmark to useful) and the strength of the evidence (on a scale ranging from exceptional to inadequate). <a href="https://elifesciences.org/about/elife-assessments">Learn more about eLife Assessments</a></p>
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Article Section Default
Introduction
TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors including those binding TNF. It was first identified together with TRAF1 as a component of TNF receptor-2 and then TNF receptor-1 (TNFR1) signalling complexes (Rothe et al., 1994; Shu et al., 1996). TRAF2, like most other TRAFs, contains a RING domain, several zinc fingers, a TRAF-N, and a conserved TRAF-C domain which is responsible for oligomerisation and receptor binding through its MATH region (Takeuchi et al., 1996; Uren and Vaux, 1996).
RING domains are nearly always associated with ubiquitin E3 ligase activity (Shi and Kehrl, 2003) and TRAF2 can promote ubiquitylation of RIPK1 in TNFR1 signalling complexes (TNFR1-SC) (Wertz et al., 2004). However TRAF2 recruits E3 ligases such as cIAPs to TNFR1-SC and these have also been shown to be able to ubiquitylate RIPK1 and regulate TNF signalling (Dynek et al., 2010; Mahoney et al., 2008; Varfolomeev et al., 2008; Vince et al., 2009). This makes it difficult to unambiguously determine the role of the E3 ligase activity of TRAF2.
Activation of JNK and NF-κB by TNF is reduced in cells from Traf2-/- mice while only JNK signalling was affected in lymphocytes from transgenic mice that express a dominant negative (DN) form of TRAF2 that lacks the RING domain (Lee et al., 1997; Yeh et al., 1997). Traf2-/-Traf5-/- mouse embryonic fibroblasts (MEFs) have a pronounced defect in activation of NF-κB by TNF, suggesting that absence of TRAF2 can be compensated by TRAF5 (Tada et al., 2001). Although activation of NF-κB was restored in Traf2-/-Traf5-/- cells by re-expression of wild type TRAF2, it was not restored when the cells were reconstituted with TRAF2 point mutants that could not bind cIAPs (Vince et al., 2009; Zhang et al., 2010). These data, together with a wealth of different lines of evidence showing that cIAPs are critical E3 ligases required for TNF-induced canonical NF-κB (Blackwell et al., 2013; Haas et al., 2009; Silke, 2011), support the idea that the main function of TRAF2 in TNF-induced NF-κB is to recruit cIAPs to the TNFR1-SC. However, it remains possible that the RING of TRAF2 plays another function, such as in activating JNK and protecting cells from TNF-induced cell death (Vince et al., 2009; Zhang et al., 2010). Furthermore it has been shown that TRAF2 can K48-ubiquitylate caspase-8 to set the threshold for TRAIL or Fas induced cell death (Gonzalvez et al., 2012). Moreover, TRAF2 inhibits non-canonical NF-κB signalling (Grech et al., 2004; Zarnegar et al., 2008) and this function requires the RING domain of TRAF2 to induce proteosomal degradation of NIK (Vince et al., 2009). However, structural and in vitro analyses indicate that, unlike TRAF6, the RING domain of TRAF2 is unable to bind E2 conjugating enzymes (Yin et al., 2009), and is therefore unlikely to have intrinsic E3 ligase activity.
Sphingosine-1-phosphate (S1P) is a pleiotropic sphingolipid mediator that regulates proliferation, differentiation, cell trafficking and vascular development (Pitson, 2011). S1P is generated by sphingosine kinase 1 and 2 (SPHK1 and SPHK2) (Kohama et al., 1998; Liu et al., 2000). Extracellular S1P mainly acts by binding to its five G protein-coupled receptors S1P1-5 (Hla and Dannenberg, 2012). However, some intracellular roles have been suggested for S1P, including the blocking of the histone deacetylases, HDAC1/2 (Hait et al., 2009) and the induction of apoptosis through interaction with BAK and BAX (Chipuk et al., 2012).
Recently, it was suggested that the RING domain of TRAF2 requires S1P as a co-factor for its E3 ligase activity (Alvarez et al., 2010). Alvarez and colleagues proposed that SPHK1 but not SPHK2 is activated by TNF and phosphorylates sphingosine to S1P which in turn binds to the RING domain of TRAF2 and serves as an essential co-factor that was missing in the experiments of Yin et al. Alvarez and colleagues, observed that in the absence of SPHK1, TNF-induced NF-κB activation was completely abolished.
Although we know a lot about TRAF2, there are still important gaps particularly with regard to cell type specificity and in vivo function of TRAF2. Moreover, despite the claims that SPHK1 and its product, S1P, are required for TRAF2 to function as a ubiquitin ligase, the responses of Traf2-/- and Sphk1-/- cells to TNF were not compared. Therefore, we undertook an analysis of TRAF2 and SPHK1 function in TNF signalling in a number of different tissues.
Surprisingly, we found that neither TRAF2 nor SPHK1 are required for TNF mediated canonical NF-κB and MAPK signalling in macrophages. However, MEFs, murine dermal fibroblasts (MDFs) and keratinocytes required TRAF2 but not SPHK1 for full strength TNF signalling. In these cell types, absence of TRAF2 caused a delay in TNF-induced activation of NF-κB and MAPK, and sensitivity to killing by TNF was increased. Absence of TRAF2 in keratinocytes in vivo resulted in psoriasis-like epidermal hyperplasia and skin inflammation. Unlike TNF-dependent genetic inflammatory skin conditions, such as IKK2 epidermal knock-out (Pasparakis et al., 2002) and the cpdm mutant (Gerlach et al., 2011), the onset of inflammation was only delayed, and not prevented by deletion of TNF. This early TNF-dependent inflammation is caused by excessive apoptotic but not necroptotic cell death and could be prevented by deletion of Casp8. We observed constitutive activation of NIK and non-canonical NF-κB in Traf2-/- keratinocytes which caused production of inflammatory cytokines and chemokines. We were able to reverse this inflammatory phenotype by simultaneously deleting both Tnf and Nfkb2 genes. Our results highlight the important role TRAF2 plays to protect keratinocytes from cell death and to down-regulate inflammatory responses and support the idea that intrinsic defects in keratinocytes can initiate psoriasis-like skin inflammation.
https://doi.org/10.7554/eLife.16370HTML
<section
class="article-section "
id="introduction"
data-behaviour="ArticleSection"
>
<header class="article-section__header">
<h2 class="article-section__header_text">Introduction</h2>
</header>
<div class="article-section__body">
<p>TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors including those binding TNF. It was first identified together with TRAF1 as a component of TNF receptor-2 and then TNF receptor-1 (TNFR1) signalling complexes (<a class="xref-bibr" href="#bib50" rel="#bib50" title="">Rothe et al., 1994</a>; <a class="xref-bibr" href="#bib54" rel="#bib54" title="">Shu et al., 1996</a>). TRAF2, like most other TRAFs, contains a RING domain, several zinc fingers, a TRAF-N, and a conserved TRAF-C domain which is responsible for oligomerisation and receptor binding through its MATH region (<a class="xref-bibr" href="#bib60" rel="#bib60">Takeuchi et al., 1996</a>; <a class="xref-bibr" href="#bib63" rel="#bib63">Uren and Vaux, 1996</a>).</p><p>RING domains are nearly always associated with ubiquitin E3 ligase activity (<a class="xref-bibr" href="#bib52" rel="#bib52">Shi and Kehrl, 2003</a>) and TRAF2 can promote ubiquitylation of RIPK1 in TNFR1 signalling complexes (TNFR1-SC) (<a class="xref-bibr" href="#bib71" rel="#bib71">Wertz et al., 2004</a>). However TRAF2 recruits E3 ligases such as cIAPs to TNFR1-SC and these have also been shown to be able to ubiquitylate RIPK1 and regulate TNF signalling (<a class="xref-bibr" href="#bib13" rel="#bib13">Dynek et al., 2010</a>; <a class="xref-bibr" href="#bib34" rel="#bib34">Mahoney et al., 2008</a>; <a class="xref-bibr" href="#bib66" rel="#bib66">Varfolomeev et al., 2008</a>; <a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>). This makes it difficult to unambiguously determine the role of the E3 ligase activity of TRAF2.</p><p>Activation of JNK and NF-κB by TNF is reduced in cells from <em>Traf2<sup>-/- </sup></em>mice while only JNK signalling was affected in lymphocytes from transgenic mice that express a dominant negative (DN) form of TRAF2 that lacks the RING domain (<a class="xref-bibr" href="#bib31" rel="#bib31">Lee et al., 1997</a>; <a class="xref-bibr" href="#bib74" rel="#bib74">Yeh et al., 1997</a>). <em>Traf2</em><sup>-/-</sup><em>Traf5</em><sup>-/-</sup> mouse embryonic fibroblasts (MEFs) have a pronounced defect in activation of NF-κB by TNF, suggesting that absence of TRAF2 can be compensated by TRAF5 (<a class="xref-bibr" href="#bib59" rel="#bib59" title="">Tada et al., 2001</a>). Although activation of NF-κB was restored in <em>Traf2</em><sup>-/-</sup><em>Traf5</em><sup>-/-</sup> cells by re-expression of wild type TRAF2, it was not restored when the cells were reconstituted with TRAF2 point mutants that could not bind cIAPs (<a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>; <a class="xref-bibr" href="#bib79" rel="#bib79">Zhang et al., 2010</a>). These data, together with a wealth of different lines of evidence showing that cIAPs are critical E3 ligases required for TNF-induced canonical NF-κB (<a class="xref-bibr" href="#bib5" rel="#bib5">Blackwell et al., 2013</a>; <a class="xref-bibr" href="#bib21" rel="#bib21">Haas et al., 2009</a>; <a class="xref-bibr" href="#bib56" rel="#bib56">Silke, 2011</a>), support the idea that the main function of TRAF2 in TNF-induced NF-κB is to recruit cIAPs to the TNFR1-SC. However, it remains possible that the RING of TRAF2 plays another function, such as in activating JNK and protecting cells from TNF-induced cell death (<a class="xref-bibr" href="#bib68" rel="#bib68" title="">Vince et al., 2009</a>; <a class="xref-bibr" href="#bib79" rel="#bib79">Zhang et al., 2010</a>). Furthermore it has been shown that TRAF2 can K48-ubiquitylate caspase-8 to set the threshold for TRAIL or Fas induced cell death (<a class="xref-bibr" href="#bib17" rel="#bib17">Gonzalvez et al., 2012</a>). Moreover, TRAF2 inhibits non-canonical NF-κB signalling (<a class="xref-bibr" href="#bib18" rel="#bib18">Grech et al., 2004</a>; <a class="xref-bibr" href="#bib78" rel="#bib78">Zarnegar et al., 2008</a>) and this function requires the RING domain of TRAF2 to induce proteosomal degradation of NIK (<a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>). However, structural and in vitro analyses indicate that, unlike TRAF6, the RING domain of TRAF2 is unable to bind E2 conjugating enzymes (<a class="xref-bibr" href="#bib76" rel="#bib76">Yin et al., 2009</a>), and is therefore unlikely to have intrinsic E3 ligase activity.</p><p>Sphingosine-1-phosphate (S1P) is a pleiotropic sphingolipid mediator that regulates proliferation, differentiation, cell trafficking and vascular development (<a class="xref-bibr" href="#bib44" rel="#bib44">Pitson, 2011</a>). S1P is generated by sphingosine kinase 1 and 2 (SPHK1 and SPHK2) (<a class="xref-bibr" href="#bib28" rel="#bib28">Kohama et al., 1998</a>; <a class="xref-bibr" href="#bib33" rel="#bib33">Liu et al., 2000</a>). Extracellular S1P mainly acts by binding to its five G protein-coupled receptors S1P<sub>1-5</sub> (<a class="xref-bibr" href="#bib25" rel="#bib25">Hla and Dannenberg, 2012</a>). However, some intracellular roles have been suggested for S1P, including the blocking of the histone deacetylases, HDAC1/2 (<a class="xref-bibr" href="#bib22" rel="#bib22">Hait et al., 2009</a>) and the induction of apoptosis through interaction with BAK and BAX (<a class="xref-bibr" href="#bib9" rel="#bib9">Chipuk et al., 2012</a>).</p><p>Recently, it was suggested that the RING domain of TRAF2 requires S1P as a co-factor for its E3 ligase activity (<a class="xref-bibr" href="#bib3" rel="#bib3">Alvarez et al., 2010</a>). Alvarez and colleagues proposed that SPHK1 but not SPHK2 is activated by TNF and phosphorylates sphingosine to S1P which in turn binds to the RING domain of TRAF2 and serves as an essential co-factor that was missing in the experiments of Yin <em>et al.</em> Alvarez and colleagues, observed that in the absence of SPHK1, TNF-induced NF-κB activation was completely abolished.</p><p>Although we know a lot about TRAF2, there are still important gaps particularly with regard to cell type specificity and in vivo function of TRAF2. Moreover, despite the claims that SPHK1 and its product, S1P, are required for TRAF2 to function as a ubiquitin ligase, the responses of <em>Traf2<sup>-/- </sup></em>and <em>Sphk1<sup>-/-</sup></em> cells to TNF were not compared. Therefore, we undertook an analysis of TRAF2 and SPHK1 function in TNF signalling in a number of different tissues.</p><p>Surprisingly, we found that neither TRAF2 nor SPHK1 are required for TNF mediated canonical NF-κB and MAPK signalling in macrophages. However, MEFs, murine dermal fibroblasts (MDFs) and keratinocytes required TRAF2 but not SPHK1 for full strength TNF signalling. In these cell types, absence of TRAF2 caused a delay in TNF-induced activation of NF-κB and MAPK, and sensitivity to killing by TNF was increased. Absence of TRAF2 in keratinocytes in vivo resulted in psoriasis-like epidermal hyperplasia and skin inflammation. Unlike TNF-dependent genetic inflammatory skin conditions, such as IKK2 epidermal knock-out (<a class="xref-bibr" href="#bib40" rel="#bib40" title="">Pasparakis et al., 2002</a>) and the <em>cpdm</em> mutant (<a class="xref-bibr" href="#bib16" rel="#bib16">Gerlach et al., 2011</a>), the onset of inflammation was only delayed, and not prevented by deletion of TNF. This early TNF-dependent inflammation is caused by excessive apoptotic but not necroptotic cell death and could be prevented by deletion of <em>Casp8</em>. We observed constitutive activation of NIK and non-canonical NF-κB in <em>Traf2<sup>-/- </sup></em>keratinocytes which caused production of inflammatory cytokines and chemokines. We were able to reverse this inflammatory phenotype by simultaneously deleting both <em>Tnf</em> and <em>Nfkb2</em> genes. Our results highlight the important role TRAF2 plays to protect keratinocytes from cell death and to down-regulate inflammatory responses and support the idea that intrinsic defects in keratinocytes can initiate psoriasis-like skin inflammation.</p>
<span class="doi doi--article-section">
<a href="https://doi.org/10.7554/eLife.16370" class="doi__link">
https://doi.org/10.7554/eLife.16370
</a>
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Article Section Editor Evaluation
Editor's evaluation
The manuscript by Rosello et al. represents a major advance in implementation of cutting-edge genome editing methodologies in the zebrafish. The study seeks to describe optimized tools for precise base editing in zebrafish and to demonstrate their effective application. Overall, this study demonstrates that cytosine base editing is an efficient and powerful method for introducing precise in vivo edits into the zebrafish genome, and will be of interest to scientists who use zebrafish and other genetic systems to model human development and disease.
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<p>The manuscript by Rosello et al. represents a major advance in implementation of cutting-edge genome editing methodologies in the zebrafish. The study seeks to describe optimized tools for precise base editing in zebrafish and to demonstrate their effective application. Overall, this study demonstrates that cytosine base editing is an efficient and powerful method for introducing precise in vivo edits into the zebrafish genome, and will be of interest to scientists who use zebrafish and other genetic systems to model human development and disease.</p>
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<a href="https://doi.org/10.7554/eLife.62927.sa1" class="doi__link">
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- Dominique Soldati-Favre
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TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors
some text to carry a linkTNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors including those binding TNF. It was first identified together with TRAF1 as a component of TNF receptor-2 and then TNF receptor-1 (TNFR1) signalling complexes (Rothe et al., 1994; Shu et al., 1996). TRAF2, like most other TRAFs, contains a RING domain, several zinc fingers, a TRAF-N, and a conserved TRAF-C domain which is responsible for oligomerisation and receptor binding through its MATH region (Takeuchi et al., 1996; Uren and Vaux, 1996).
RING domains are nearly always associated with ubiquitin E3 ligase activity (Shi and Kehrl, 2003) and TRAF2 can promote ubiquitylation of RIPK1 in TNFR1 signalling complexes (TNFR1-SC) (Wertz et al., 2004). However TRAF2 recruits E3 ligases such as cIAPs to TNFR1-SC and these have also been shown to be able to ubiquitylate RIPK1 and regulate TNF signalling (Dynek et al., 2010; Mahoney et al., 2008; Varfolomeev et al., 2008; Vince et al., 2009). This makes it difficult to unambiguously determine the role of the E3 ligase activity of TRAF2.
Activation of JNK and NF-κB by TNF is reduced in cells from Traf2-/- mice while only JNK signalling was affected in lymphocytes from transgenic mice that express a dominant negative (DN) form of TRAF2 that lacks the RING domain (Lee et al., 1997; Yeh et al., 1997). Traf2-/-Traf5-/- mouse embryonic fibroblasts (MEFs) have a pronounced defect in activation of NF-κB by TNF, suggesting that absence of TRAF2 can be compensated by TRAF5 (Tada et al., 2001). Although activation of NF-κB was restored in Traf2-/-Traf5-/- cells by re-expression of wild type TRAF2, it was not restored when the cells were reconstituted with TRAF2 point mutants that could not bind cIAPs (Vince et al., 2009; Zhang et al., 2010). These data, together with a wealth of different lines of evidence showing that cIAPs are critical E3 ligases required for TNF-induced canonical NF-κB (Blackwell et al., 2013; Haas et al., 2009; Silke, 2011), support the idea that the main function of TRAF2 in TNF-induced NF-κB is to recruit cIAPs to the TNFR1-SC. However, it remains possible that the RING of TRAF2 plays another function, such as in activating JNK and protecting cells from TNF-induced cell death (Vince et al., 2009; Zhang et al., 2010). Furthermore it has been shown that TRAF2 can K48-ubiquitylate caspase-8 to set the threshold for TRAIL or Fas induced cell death (Gonzalvez et al., 2012). Moreover, TRAF2 inhibits non-canonical NF-κB signalling (Grech et al., 2004; Zarnegar et al., 2008) and this function requires the RING domain of TRAF2 to induce proteosomal degradation of NIK (Vince et al., 2009). However, structural and in vitro analyses indicate that, unlike TRAF6, the RING domain of TRAF2 is unable to bind E2 conjugating enzymes (Yin et al., 2009), and is therefore unlikely to have intrinsic E3 ligase activity.
Sphingosine-1-phosphate (S1P) is a pleiotropic sphingolipid mediator that regulates proliferation, differentiation, cell trafficking and vascular development (Pitson, 2011). S1P is generated by sphingosine kinase 1 and 2 (SPHK1 and SPHK2) (Kohama et al., 1998; Liu et al., 2000). Extracellular S1P mainly acts by binding to its five G protein-coupled receptors S1P1-5 (Hla and Dannenberg, 2012). However, some intracellular roles have been suggested for S1P, including the blocking of the histone deacetylases, HDAC1/2 (Hait et al., 2009) and the induction of apoptosis through interaction with BAK and BAX (Chipuk et al., 2012).
Recently, it was suggested that the RING domain of TRAF2 requires S1P as a co-factor for its E3 ligase activity (Alvarez et al., 2010). Alvarez and colleagues proposed that SPHK1 but not SPHK2 is activated by TNF and phosphorylates sphingosine to S1P which in turn binds to the RING domain of TRAF2 and serves as an essential co-factor that was missing in the experiments of Yin et al. Alvarez and colleagues, observed that in the absence of SPHK1, TNF-induced NF-κB activation was completely abolished.
Although we know a lot about TRAF2, there are still important gaps particularly with regard to cell type specificity and in vivo function of TRAF2. Moreover, despite the claims that SPHK1 and its product, S1P, are required for TRAF2 to function as a ubiquitin ligase, the responses of Traf2-/- and Sphk1-/- cells to TNF were not compared. Therefore, we undertook an analysis of TRAF2 and SPHK1 function in TNF signalling in a number of different tissues.
Surprisingly, we found that neither TRAF2 nor SPHK1 are required for TNF mediated canonical NF-κB and MAPK signalling in macrophages. However, MEFs, murine dermal fibroblasts (MDFs) and keratinocytes required TRAF2 but not SPHK1 for full strength TNF signalling. In these cell types, absence of TRAF2 caused a delay in TNF-induced activation of NF-κB and MAPK, and sensitivity to killing by TNF was increased. Absence of TRAF2 in keratinocytes in vivo resulted in psoriasis-like epidermal hyperplasia and skin inflammation. Unlike TNF-dependent genetic inflammatory skin conditions, such as IKK2 epidermal knock-out (Pasparakis et al., 2002) and the cpdm mutant (Gerlach et al., 2011), the onset of inflammation was only delayed, and not prevented by deletion of TNF. This early TNF-dependent inflammation is caused by excessive apoptotic but not necroptotic cell death and could be prevented by deletion of Casp8. We observed constitutive activation of NIK and non-canonical NF-κB in Traf2-/- keratinocytes which caused production of inflammatory cytokines and chemokines. We were able to reverse this inflammatory phenotype by simultaneously deleting both Tnf and Nfkb2 genes. Our results highlight the important role TRAF2 plays to protect keratinocytes from cell death and to down-regulate inflammatory responses and support the idea that intrinsic defects in keratinocytes can initiate psoriasis-like skin inflammation.
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<section
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<header class="article-section__header">
<h3 class="article-section__header_text">TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors</h3>
<a href="#" class="article-section__header_link">some text to carry a link</a>
</header>
<div class="article-section__body">
<p>TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors including those binding TNF. It was first identified together with TRAF1 as a component of TNF receptor-2 and then TNF receptor-1 (TNFR1) signalling complexes (<a class="xref-bibr" href="#bib50" rel="#bib50" title="">Rothe et al., 1994</a>; <a class="xref-bibr" href="#bib54" rel="#bib54" title="">Shu et al., 1996</a>). TRAF2, like most other TRAFs, contains a RING domain, several zinc fingers, a TRAF-N, and a conserved TRAF-C domain which is responsible for oligomerisation and receptor binding through its MATH region (<a class="xref-bibr" href="#bib60" rel="#bib60">Takeuchi et al., 1996</a>; <a class="xref-bibr" href="#bib63" rel="#bib63">Uren and Vaux, 1996</a>).</p><p>RING domains are nearly always associated with ubiquitin E3 ligase activity (<a class="xref-bibr" href="#bib52" rel="#bib52">Shi and Kehrl, 2003</a>) and TRAF2 can promote ubiquitylation of RIPK1 in TNFR1 signalling complexes (TNFR1-SC) (<a class="xref-bibr" href="#bib71" rel="#bib71">Wertz et al., 2004</a>). However TRAF2 recruits E3 ligases such as cIAPs to TNFR1-SC and these have also been shown to be able to ubiquitylate RIPK1 and regulate TNF signalling (<a class="xref-bibr" href="#bib13" rel="#bib13">Dynek et al., 2010</a>; <a class="xref-bibr" href="#bib34" rel="#bib34">Mahoney et al., 2008</a>; <a class="xref-bibr" href="#bib66" rel="#bib66">Varfolomeev et al., 2008</a>; <a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>). This makes it difficult to unambiguously determine the role of the E3 ligase activity of TRAF2.</p><p>Activation of JNK and NF-κB by TNF is reduced in cells from <em>Traf2<sup>-/- </sup></em>mice while only JNK signalling was affected in lymphocytes from transgenic mice that express a dominant negative (DN) form of TRAF2 that lacks the RING domain (<a class="xref-bibr" href="#bib31" rel="#bib31">Lee et al., 1997</a>; <a class="xref-bibr" href="#bib74" rel="#bib74">Yeh et al., 1997</a>). <em>Traf2</em><sup>-/-</sup><em>Traf5</em><sup>-/-</sup> mouse embryonic fibroblasts (MEFs) have a pronounced defect in activation of NF-κB by TNF, suggesting that absence of TRAF2 can be compensated by TRAF5 (<a class="xref-bibr" href="#bib59" rel="#bib59" title="">Tada et al., 2001</a>). Although activation of NF-κB was restored in <em>Traf2</em><sup>-/-</sup><em>Traf5</em><sup>-/-</sup> cells by re-expression of wild type TRAF2, it was not restored when the cells were reconstituted with TRAF2 point mutants that could not bind cIAPs (<a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>; <a class="xref-bibr" href="#bib79" rel="#bib79">Zhang et al., 2010</a>). These data, together with a wealth of different lines of evidence showing that cIAPs are critical E3 ligases required for TNF-induced canonical NF-κB (<a class="xref-bibr" href="#bib5" rel="#bib5">Blackwell et al., 2013</a>; <a class="xref-bibr" href="#bib21" rel="#bib21">Haas et al., 2009</a>; <a class="xref-bibr" href="#bib56" rel="#bib56">Silke, 2011</a>), support the idea that the main function of TRAF2 in TNF-induced NF-κB is to recruit cIAPs to the TNFR1-SC. However, it remains possible that the RING of TRAF2 plays another function, such as in activating JNK and protecting cells from TNF-induced cell death (<a class="xref-bibr" href="#bib68" rel="#bib68" title="">Vince et al., 2009</a>; <a class="xref-bibr" href="#bib79" rel="#bib79">Zhang et al., 2010</a>). Furthermore it has been shown that TRAF2 can K48-ubiquitylate caspase-8 to set the threshold for TRAIL or Fas induced cell death (<a class="xref-bibr" href="#bib17" rel="#bib17">Gonzalvez et al., 2012</a>). Moreover, TRAF2 inhibits non-canonical NF-κB signalling (<a class="xref-bibr" href="#bib18" rel="#bib18">Grech et al., 2004</a>; <a class="xref-bibr" href="#bib78" rel="#bib78">Zarnegar et al., 2008</a>) and this function requires the RING domain of TRAF2 to induce proteosomal degradation of NIK (<a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>). However, structural and in vitro analyses indicate that, unlike TRAF6, the RING domain of TRAF2 is unable to bind E2 conjugating enzymes (<a class="xref-bibr" href="#bib76" rel="#bib76">Yin et al., 2009</a>), and is therefore unlikely to have intrinsic E3 ligase activity.</p><p>Sphingosine-1-phosphate (S1P) is a pleiotropic sphingolipid mediator that regulates proliferation, differentiation, cell trafficking and vascular development (<a class="xref-bibr" href="#bib44" rel="#bib44">Pitson, 2011</a>). S1P is generated by sphingosine kinase 1 and 2 (SPHK1 and SPHK2) (<a class="xref-bibr" href="#bib28" rel="#bib28">Kohama et al., 1998</a>; <a class="xref-bibr" href="#bib33" rel="#bib33">Liu et al., 2000</a>). Extracellular S1P mainly acts by binding to its five G protein-coupled receptors S1P<sub>1-5</sub> (<a class="xref-bibr" href="#bib25" rel="#bib25">Hla and Dannenberg, 2012</a>). However, some intracellular roles have been suggested for S1P, including the blocking of the histone deacetylases, HDAC1/2 (<a class="xref-bibr" href="#bib22" rel="#bib22">Hait et al., 2009</a>) and the induction of apoptosis through interaction with BAK and BAX (<a class="xref-bibr" href="#bib9" rel="#bib9">Chipuk et al., 2012</a>).</p><p>Recently, it was suggested that the RING domain of TRAF2 requires S1P as a co-factor for its E3 ligase activity (<a class="xref-bibr" href="#bib3" rel="#bib3">Alvarez et al., 2010</a>). Alvarez and colleagues proposed that SPHK1 but not SPHK2 is activated by TNF and phosphorylates sphingosine to S1P which in turn binds to the RING domain of TRAF2 and serves as an essential co-factor that was missing in the experiments of Yin <em>et al.</em> Alvarez and colleagues, observed that in the absence of SPHK1, TNF-induced NF-κB activation was completely abolished.</p><p>Although we know a lot about TRAF2, there are still important gaps particularly with regard to cell type specificity and in vivo function of TRAF2. Moreover, despite the claims that SPHK1 and its product, S1P, are required for TRAF2 to function as a ubiquitin ligase, the responses of <em>Traf2<sup>-/- </sup></em>and <em>Sphk1<sup>-/-</sup></em> cells to TNF were not compared. Therefore, we undertook an analysis of TRAF2 and SPHK1 function in TNF signalling in a number of different tissues.</p><p>Surprisingly, we found that neither TRAF2 nor SPHK1 are required for TNF mediated canonical NF-κB and MAPK signalling in macrophages. However, MEFs, murine dermal fibroblasts (MDFs) and keratinocytes required TRAF2 but not SPHK1 for full strength TNF signalling. In these cell types, absence of TRAF2 caused a delay in TNF-induced activation of NF-κB and MAPK, and sensitivity to killing by TNF was increased. Absence of TRAF2 in keratinocytes in vivo resulted in psoriasis-like epidermal hyperplasia and skin inflammation. Unlike TNF-dependent genetic inflammatory skin conditions, such as IKK2 epidermal knock-out (<a class="xref-bibr" href="#bib40" rel="#bib40" title="">Pasparakis et al., 2002</a>) and the <em>cpdm</em> mutant (<a class="xref-bibr" href="#bib16" rel="#bib16">Gerlach et al., 2011</a>), the onset of inflammation was only delayed, and not prevented by deletion of TNF. This early TNF-dependent inflammation is caused by excessive apoptotic but not necroptotic cell death and could be prevented by deletion of <em>Casp8</em>. We observed constitutive activation of NIK and non-canonical NF-κB in <em>Traf2<sup>-/- </sup></em>keratinocytes which caused production of inflammatory cytokines and chemokines. We were able to reverse this inflammatory phenotype by simultaneously deleting both <em>Tnf</em> and <em>Nfkb2</em> genes. Our results highlight the important role TRAF2 plays to protect keratinocytes from cell death and to down-regulate inflammatory responses and support the idea that intrinsic defects in keratinocytes can initiate psoriasis-like skin inflammation.</p>
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<p>This article was published via eLife's original peer review and publishing model, which was phased out in 2023. eLife's editors accepted this article for publication after peer review and was subject to mandatory revision requests before it was published.</p><section class="article-section"><header class="article-section__header"><h4 class="article-section__header_text">History</h4></header><div class="article-section__body"><section class="article-section"><div class="article-section__body"><ul class="list list--line" data-behaviour="List"><li><strong>Version of Record published</strong><time datetime="2024-05-29">May 29, 2024</time></li><li><strong>Preprint posted</strong><time datetime="2024-04-11">April 11, 2024</time></li><li><strong>Preprint posted</strong><time datetime="2023-11-03">November 3, 2023</time></li><li><strong>Preprint posted</strong><time datetime="2023-09-03">September 3, 2023</time></li><li><strong>Sent for peer review</strong><time datetime="2023-08-24">August 24, 2023</time></li></ul></div></section></div></section>
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TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors including those binding TNF. It was first identified together with TRAF1 as a component of TNF receptor-2 and then TNF receptor-1 (TNFR1) signalling complexes (Rothe et al., 1994; Shu et al., 1996). TRAF2, like most other TRAFs, contains a RING domain, several zinc fingers, a TRAF-N, and a conserved TRAF-C domain which is responsible for oligomerisation and receptor binding through its MATH region (Takeuchi et al., 1996; Uren and Vaux, 1996).
RING domains are nearly always associated with ubiquitin E3 ligase activity (Shi and Kehrl, 2003) and TRAF2 can promote ubiquitylation of RIPK1 in TNFR1 signalling complexes (TNFR1-SC) (Wertz et al., 2004). However TRAF2 recruits E3 ligases such as cIAPs to TNFR1-SC and these have also been shown to be able to ubiquitylate RIPK1 and regulate TNF signalling (Dynek et al., 2010; Mahoney et al., 2008; Varfolomeev et al., 2008; Vince et al., 2009). This makes it difficult to unambiguously determine the role of the E3 ligase activity of TRAF2.
Activation of JNK and NF-κB by TNF is reduced in cells from Traf2-/- mice while only JNK signalling was affected in lymphocytes from transgenic mice that express a dominant negative (DN) form of TRAF2 that lacks the RING domain (Lee et al., 1997; Yeh et al., 1997). Traf2-/-Traf5-/- mouse embryonic fibroblasts (MEFs) have a pronounced defect in activation of NF-κB by TNF, suggesting that absence of TRAF2 can be compensated by TRAF5 (Tada et al., 2001). Although activation of NF-κB was restored in Traf2-/-Traf5-/- cells by re-expression of wild type TRAF2, it was not restored when the cells were reconstituted with TRAF2 point mutants that could not bind cIAPs (Vince et al., 2009; Zhang et al., 2010). These data, together with a wealth of different lines of evidence showing that cIAPs are critical E3 ligases required for TNF-induced canonical NF-κB (Blackwell et al., 2013; Haas et al., 2009; Silke, 2011), support the idea that the main function of TRAF2 in TNF-induced NF-κB is to recruit cIAPs to the TNFR1-SC. However, it remains possible that the RING of TRAF2 plays another function, such as in activating JNK and protecting cells from TNF-induced cell death (Vince et al., 2009; Zhang et al., 2010). Furthermore it has been shown that TRAF2 can K48-ubiquitylate caspase-8 to set the threshold for TRAIL or Fas induced cell death (Gonzalvez et al., 2012). Moreover, TRAF2 inhibits non-canonical NF-κB signalling (Grech et al., 2004; Zarnegar et al., 2008) and this function requires the RING domain of TRAF2 to induce proteosomal degradation of NIK (Vince et al., 2009). However, structural and in vitro analyses indicate that, unlike TRAF6, the RING domain of TRAF2 is unable to bind E2 conjugating enzymes (Yin et al., 2009), and is therefore unlikely to have intrinsic E3 ligase activity.
Sphingosine-1-phosphate (S1P) is a pleiotropic sphingolipid mediator that regulates proliferation, differentiation, cell trafficking and vascular development (Pitson, 2011). S1P is generated by sphingosine kinase 1 and 2 (SPHK1 and SPHK2) (Kohama et al., 1998; Liu et al., 2000). Extracellular S1P mainly acts by binding to its five G protein-coupled receptors S1P1-5 (Hla and Dannenberg, 2012). However, some intracellular roles have been suggested for S1P, including the blocking of the histone deacetylases, HDAC1/2 (Hait et al., 2009) and the induction of apoptosis through interaction with BAK and BAX (Chipuk et al., 2012).
Recently, it was suggested that the RING domain of TRAF2 requires S1P as a co-factor for its E3 ligase activity (Alvarez et al., 2010). Alvarez and colleagues proposed that SPHK1 but not SPHK2 is activated by TNF and phosphorylates sphingosine to S1P which in turn binds to the RING domain of TRAF2 and serves as an essential co-factor that was missing in the experiments of Yin et al. Alvarez and colleagues, observed that in the absence of SPHK1, TNF-induced NF-κB activation was completely abolished.
Although we know a lot about TRAF2, there are still important gaps particularly with regard to cell type specificity and in vivo function of TRAF2. Moreover, despite the claims that SPHK1 and its product, S1P, are required for TRAF2 to function as a ubiquitin ligase, the responses of Traf2-/- and Sphk1-/- cells to TNF were not compared. Therefore, we undertook an analysis of TRAF2 and SPHK1 function in TNF signalling in a number of different tissues.
Surprisingly, we found that neither TRAF2 nor SPHK1 are required for TNF mediated canonical NF-κB and MAPK signalling in macrophages. However, MEFs, murine dermal fibroblasts (MDFs) and keratinocytes required TRAF2 but not SPHK1 for full strength TNF signalling. In these cell types, absence of TRAF2 caused a delay in TNF-induced activation of NF-κB and MAPK, and sensitivity to killing by TNF was increased. Absence of TRAF2 in keratinocytes in vivo resulted in psoriasis-like epidermal hyperplasia and skin inflammation. Unlike TNF-dependent genetic inflammatory skin conditions, such as IKK2 epidermal knock-out (Pasparakis et al., 2002) and the cpdm mutant (Gerlach et al., 2011), the onset of inflammation was only delayed, and not prevented by deletion of TNF. This early TNF-dependent inflammation is caused by excessive apoptotic but not necroptotic cell death and could be prevented by deletion of Casp8. We observed constitutive activation of NIK and non-canonical NF-κB in Traf2-/- keratinocytes which caused production of inflammatory cytokines and chemokines. We were able to reverse this inflammatory phenotype by simultaneously deleting both Tnf and Nfkb2 genes. Our results highlight the important role TRAF2 plays to protect keratinocytes from cell death and to down-regulate inflammatory responses and support the idea that intrinsic defects in keratinocytes can initiate psoriasis-like skin inflammation.
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<p>TNF Receptor Associated Factor 2 (TRAF2) is an adaptor protein that transduces signals following ligation of certain cytokine receptors including those binding TNF. It was first identified together with TRAF1 as a component of TNF receptor-2 and then TNF receptor-1 (TNFR1) signalling complexes (<a class="xref-bibr" href="#bib50" rel="#bib50" title="">Rothe et al., 1994</a>; <a class="xref-bibr" href="#bib54" rel="#bib54" title="">Shu et al., 1996</a>). TRAF2, like most other TRAFs, contains a RING domain, several zinc fingers, a TRAF-N, and a conserved TRAF-C domain which is responsible for oligomerisation and receptor binding through its MATH region (<a class="xref-bibr" href="#bib60" rel="#bib60">Takeuchi et al., 1996</a>; <a class="xref-bibr" href="#bib63" rel="#bib63">Uren and Vaux, 1996</a>).</p><p>RING domains are nearly always associated with ubiquitin E3 ligase activity (<a class="xref-bibr" href="#bib52" rel="#bib52">Shi and Kehrl, 2003</a>) and TRAF2 can promote ubiquitylation of RIPK1 in TNFR1 signalling complexes (TNFR1-SC) (<a class="xref-bibr" href="#bib71" rel="#bib71">Wertz et al., 2004</a>). However TRAF2 recruits E3 ligases such as cIAPs to TNFR1-SC and these have also been shown to be able to ubiquitylate RIPK1 and regulate TNF signalling (<a class="xref-bibr" href="#bib13" rel="#bib13">Dynek et al., 2010</a>; <a class="xref-bibr" href="#bib34" rel="#bib34">Mahoney et al., 2008</a>; <a class="xref-bibr" href="#bib66" rel="#bib66">Varfolomeev et al., 2008</a>; <a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>). This makes it difficult to unambiguously determine the role of the E3 ligase activity of TRAF2.</p><p>Activation of JNK and NF-κB by TNF is reduced in cells from <em>Traf2<sup>-/- </sup></em>mice while only JNK signalling was affected in lymphocytes from transgenic mice that express a dominant negative (DN) form of TRAF2 that lacks the RING domain (<a class="xref-bibr" href="#bib31" rel="#bib31">Lee et al., 1997</a>; <a class="xref-bibr" href="#bib74" rel="#bib74">Yeh et al., 1997</a>). <em>Traf2</em><sup>-/-</sup><em>Traf5</em><sup>-/-</sup> mouse embryonic fibroblasts (MEFs) have a pronounced defect in activation of NF-κB by TNF, suggesting that absence of TRAF2 can be compensated by TRAF5 (<a class="xref-bibr" href="#bib59" rel="#bib59" title="">Tada et al., 2001</a>). Although activation of NF-κB was restored in <em>Traf2</em><sup>-/-</sup><em>Traf5</em><sup>-/-</sup> cells by re-expression of wild type TRAF2, it was not restored when the cells were reconstituted with TRAF2 point mutants that could not bind cIAPs (<a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>; <a class="xref-bibr" href="#bib79" rel="#bib79">Zhang et al., 2010</a>). These data, together with a wealth of different lines of evidence showing that cIAPs are critical E3 ligases required for TNF-induced canonical NF-κB (<a class="xref-bibr" href="#bib5" rel="#bib5">Blackwell et al., 2013</a>; <a class="xref-bibr" href="#bib21" rel="#bib21">Haas et al., 2009</a>; <a class="xref-bibr" href="#bib56" rel="#bib56">Silke, 2011</a>), support the idea that the main function of TRAF2 in TNF-induced NF-κB is to recruit cIAPs to the TNFR1-SC. However, it remains possible that the RING of TRAF2 plays another function, such as in activating JNK and protecting cells from TNF-induced cell death (<a class="xref-bibr" href="#bib68" rel="#bib68" title="">Vince et al., 2009</a>; <a class="xref-bibr" href="#bib79" rel="#bib79">Zhang et al., 2010</a>). Furthermore it has been shown that TRAF2 can K48-ubiquitylate caspase-8 to set the threshold for TRAIL or Fas induced cell death (<a class="xref-bibr" href="#bib17" rel="#bib17">Gonzalvez et al., 2012</a>). Moreover, TRAF2 inhibits non-canonical NF-κB signalling (<a class="xref-bibr" href="#bib18" rel="#bib18">Grech et al., 2004</a>; <a class="xref-bibr" href="#bib78" rel="#bib78">Zarnegar et al., 2008</a>) and this function requires the RING domain of TRAF2 to induce proteosomal degradation of NIK (<a class="xref-bibr" href="#bib68" rel="#bib68">Vince et al., 2009</a>). However, structural and in vitro analyses indicate that, unlike TRAF6, the RING domain of TRAF2 is unable to bind E2 conjugating enzymes (<a class="xref-bibr" href="#bib76" rel="#bib76">Yin et al., 2009</a>), and is therefore unlikely to have intrinsic E3 ligase activity.</p><p>Sphingosine-1-phosphate (S1P) is a pleiotropic sphingolipid mediator that regulates proliferation, differentiation, cell trafficking and vascular development (<a class="xref-bibr" href="#bib44" rel="#bib44">Pitson, 2011</a>). S1P is generated by sphingosine kinase 1 and 2 (SPHK1 and SPHK2) (<a class="xref-bibr" href="#bib28" rel="#bib28">Kohama et al., 1998</a>; <a class="xref-bibr" href="#bib33" rel="#bib33">Liu et al., 2000</a>). Extracellular S1P mainly acts by binding to its five G protein-coupled receptors S1P<sub>1-5</sub> (<a class="xref-bibr" href="#bib25" rel="#bib25">Hla and Dannenberg, 2012</a>). However, some intracellular roles have been suggested for S1P, including the blocking of the histone deacetylases, HDAC1/2 (<a class="xref-bibr" href="#bib22" rel="#bib22">Hait et al., 2009</a>) and the induction of apoptosis through interaction with BAK and BAX (<a class="xref-bibr" href="#bib9" rel="#bib9">Chipuk et al., 2012</a>).</p><p>Recently, it was suggested that the RING domain of TRAF2 requires S1P as a co-factor for its E3 ligase activity (<a class="xref-bibr" href="#bib3" rel="#bib3">Alvarez et al., 2010</a>). Alvarez and colleagues proposed that SPHK1 but not SPHK2 is activated by TNF and phosphorylates sphingosine to S1P which in turn binds to the RING domain of TRAF2 and serves as an essential co-factor that was missing in the experiments of Yin <em>et al.</em> Alvarez and colleagues, observed that in the absence of SPHK1, TNF-induced NF-κB activation was completely abolished.</p><p>Although we know a lot about TRAF2, there are still important gaps particularly with regard to cell type specificity and in vivo function of TRAF2. Moreover, despite the claims that SPHK1 and its product, S1P, are required for TRAF2 to function as a ubiquitin ligase, the responses of <em>Traf2<sup>-/- </sup></em>and <em>Sphk1<sup>-/-</sup></em> cells to TNF were not compared. Therefore, we undertook an analysis of TRAF2 and SPHK1 function in TNF signalling in a number of different tissues.</p><p>Surprisingly, we found that neither TRAF2 nor SPHK1 are required for TNF mediated canonical NF-κB and MAPK signalling in macrophages. However, MEFs, murine dermal fibroblasts (MDFs) and keratinocytes required TRAF2 but not SPHK1 for full strength TNF signalling. In these cell types, absence of TRAF2 caused a delay in TNF-induced activation of NF-κB and MAPK, and sensitivity to killing by TNF was increased. Absence of TRAF2 in keratinocytes in vivo resulted in psoriasis-like epidermal hyperplasia and skin inflammation. Unlike TNF-dependent genetic inflammatory skin conditions, such as IKK2 epidermal knock-out (<a class="xref-bibr" href="#bib40" rel="#bib40" title="">Pasparakis et al., 2002</a>) and the <em>cpdm</em> mutant (<a class="xref-bibr" href="#bib16" rel="#bib16">Gerlach et al., 2011</a>), the onset of inflammation was only delayed, and not prevented by deletion of TNF. This early TNF-dependent inflammation is caused by excessive apoptotic but not necroptotic cell death and could be prevented by deletion of <em>Casp8</em>. We observed constitutive activation of NIK and non-canonical NF-κB in <em>Traf2<sup>-/- </sup></em>keratinocytes which caused production of inflammatory cytokines and chemokines. We were able to reverse this inflammatory phenotype by simultaneously deleting both <em>Tnf</em> and <em>Nfkb2</em> genes. Our results highlight the important role TRAF2 plays to protect keratinocytes from cell death and to down-regulate inflammatory responses and support the idea that intrinsic defects in keratinocytes can initiate psoriasis-like skin inflammation.</p>
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Authors Details
Author details
Jenny Bloggs
- Evolutionary Studies Institute and Centre of Excellence in PalaeoSciences, University of the Witwatersrand, Johannesburg, South Africa
- School of Geosciences, University of the Witwatersrand, Johannesburg, South Africa
Present addresses
- Department of Inventive Inventions, Univertity of Wessex, Windowchester, Wessex
Contribution
Conception and design, Acquisition of data, Analysis and interpretation of data, Drafting or revising the article, Contributed unpublished essential data or reagentsFor correspondence
Competing interests
No competing interests declared"This ORCID iD identifies the author of this article:" 0000-0002-3400-7927 ICGC Chronic Myeloid Disorders Group
- Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
Competing interests
No competing interests declared- Luca Malcovati, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy
- Sudhir Tauro, Division of Medial Sciences, University of Dundee, Dundee, UK
- Jacqueline Boultwood, Nuffield Department of Clinical Laboratory Sciences, University of Oxford, UK
HTML
<h3 class="authors-details__heading">Author details</h3>
<ol class="authors-details__authors">
<li class="authors-details__author"><div class="author-details" data-popup-contents="author1" id="author1">
<h4 class="author-details__name">Jenny Bloggs</h4>
<section class="author-details__section">
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Evolutionary Studies Institute and Centre of Excellence in PalaeoSciences, University of the Witwatersrand, Johannesburg, South Africa</li>
<li class="author-details__text">School of Geosciences, University of the Witwatersrand, Johannesburg, South Africa</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Present addresses</h5>
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Department of Inventive Inventions, Univertity of Wessex, Windowchester, Wessex</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Contribution</h5>
<span class="author-details__text">Conception and design, Acquisition of data, Analysis and interpretation of data, Drafting or revising the article, Contributed unpublished essential data or reagents</span>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">For correspondence</h5>
<ol class="author-details__list list list--bullet">
<li class="author-details__text"><a href="mailto:jenny@bloggs.com">jenny@bloggs.com</a></li>
<li class="author-details__text"><a href="tel:+1555432109876">+1 555-4321-09876</a></li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Competing interests</h5>
<span class="author-details__text">No competing interests declared</span>
</section>
<section class="author-details__section">
<span class="orcid">
<a href="https://orcid.org/0000-0002-3400-7927">
<picture>
<source srcset="../../assets/img/icons/orcid.svg" type="image/svg+xml">
<img src="../../assets/img/icons/orcid.png" class="orcid__icon"
alt="ORCID icon">
</picture> <span class="visuallyhidden">"This ORCID iD identifies the author of this article:"</span>
0000-0002-3400-7927</a>
</span>
</section>
</div>
</li>
<li class="authors-details__author"><div class="author-details" data-popup-contents="author2" id="author2">
<h4 class="author-details__name">ICGC Chronic Myeloid Disorders Group</h4>
<section class="author-details__section">
<ol class="author-details__list list list--bullet">
<li class="author-details__text">Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom</li>
</ol>
</section>
<section class="author-details__section">
<h5 class="author-details__heading">Competing interests</h5>
<span class="author-details__text">No competing interests declared</span>
</section>
<ol class="list list--bullet">
<li>Luca Malcovati, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy</li>
<li>Sudhir Tauro, Division of Medial Sciences, University of Dundee, Dundee, UK</li>
<li>Jacqueline Boultwood, Nuffield Department of Clinical Laboratory Sciences, University of Oxford, UK</li>
</ol>
</div>
</li>
</ol>
Authors
- Lee R Berger
- John Hawks
- Darryl J de Ruiter
- Steven E Churchill
- Peter Schmid
- Lucas K Delezene
- Tracy L Kivell
- Heather M Garvin
- Scott A Williams
- Jeremy M DeSilva
- Matthew M Skinner
- Charles M Musiba
- Noel Cameron
- Trenton W Holliday
- William Harcourt-Smith
- Rebecca R Ackermann
- Markus Bastir
- Barry Bogin
- Debra Bolter
- Juliet Brophy
- Zachary D Cofran
- Kimberly A Congdon
- Andrew S Deane
- Mana Dembo
- Michelle Drapeau
- Marina C Elliott
- Elen M Feuerriegel
- Daniel Garcia-Martinez
- David J Green
- Alia Gurtov
- Joel D Irish
- Ashley Kruger
- Myra F Laird
- Damiano Marchi
- Marc R Meyer
- Shahed Nalla
- Enquye W Negash
- Caley M Orr
- Davorka Radovcic
- Lauren Schroeder
- Jill E Scott
- Zachary Throckmorton
- Caroline VanSickle
- Christopher S Walker
- Pianpian Wei
- Bernhard Zipfel
- University of the Witwatersrand, South Africa;
- University of Wisconsin-Madison, United States;
- Texas A&M University, United States;
- Duke University, United States;
- University of Zurich, Switzerland;
- University of Arkansas, United States;
- University of Kent, United Kingdom;
- Max Planck Institute for Evolutionary Anthropology, Germany;
- Mercyhurst University, United States;
- New York University, United States;
- New York Consortium in Evolutionary Primatology, United States;
- Dartmouth College, United States;
- University of Colorado Denver, United States;
- Loughborough University, United Kingdom;
- Tulane University, United States;
- Lehman College, United States;
- American Museum of Natural History, United States;
- University of Cape Town, South Africa;
- Museo Nacional de Ciencias Naturales, Spain;
- Modesto Junior College, United States;
- Louisiana State University, United States;
- Nazarbayev University, Kazakhstan;
- University of Missouri, United States;
- University of Kentucky College of Medicine, United States;
- Simon Fraser University, Canada;
- Université de Montréal, Canada;
- Australian National University, Australia;
- Biology Department, Universidad Autònoma de Madrid, Spain;
- Midwestern University, United States;
- Liverpool John Moores University, United Kingdom;
- University of Pisa, Italy;
- Chaffey College, United States;
- University of Johannesburg, South Africa;
- George Washington University, United States;
- University of Colorado School of Medicine, United States;
- Croatian Natural History Museum, Croatia;
- University of Iowa, United States;
- Lincoln Memorial University, United States;
- Smithsonian Institution, United States;
HTML
<div class="authors" data-behaviour="Authors">
<ol class="author_list" aria-label="Authors of this article">
<li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Lee R Berger</a><span class="author_suffix"> <picture>
<source srcset="../../assets/img/icons/corresponding-author.svg" type="image/svg+xml">
<img src="../../assets/img/icons/corresponding-author@1x.png"
srcset="../../assets/img/icons/corresponding-author@2x.png 2x, ../../assets/img/icons/corresponding-author@1x.png 1x"
alt="Is a corresponding author" class="author_icon">
</picture></span></span></li><li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">John Hawks</a></span></li><li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Darryl J de Ruiter</a></span></li><li class="author_list_item"><span class="author">Steven E Churchill</span></li><li class="author_list_item"><span class="author">Peter Schmid</span></li><li class="author_list_item"><span class="author">Lucas K Delezene</span></li><li class="author_list_item"><span class="author">Tracy L Kivell</span></li><li class="author_list_item"><span class="author">Heather M Garvin</span></li><li class="author_list_item"><span class="author">Scott A Williams</span></li><li class="author_list_item"><span class="author">Jeremy M DeSilva</span></li><li class="author_list_item"><span class="author">Matthew M Skinner</span></li><li class="author_list_item"><span class="author">Charles M Musiba</span></li><li class="author_list_item"><span class="author">Noel Cameron</span></li><li class="author_list_item"><span class="author">Trenton W Holliday</span></li><li class="author_list_item"><span class="author">William Harcourt-Smith</span></li><li class="author_list_item"><span class="author">Rebecca R Ackermann</span></li><li class="author_list_item"><span class="author">Markus Bastir</span></li><li class="author_list_item"><span class="author">Barry Bogin</span></li><li class="author_list_item"><span class="author">Debra Bolter</span></li><li class="author_list_item"><span class="author">Juliet Brophy</span></li><li class="author_list_item"><span class="author">Zachary D Cofran</span></li><li class="author_list_item"><span class="author">Kimberly A Congdon</span></li><li class="author_list_item"><span class="author">Andrew S Deane</span></li><li class="author_list_item"><span class="author">Mana Dembo</span></li><li class="author_list_item"><span class="author">Michelle Drapeau</span></li><li class="author_list_item"><span class="author">Marina C Elliott</span></li><li class="author_list_item"><span class="author">Elen M Feuerriegel</span></li><li class="author_list_item"><span class="author">Daniel Garcia-Martinez</span></li><li class="author_list_item"><span class="author">David J Green</span></li><li class="author_list_item"><span class="author">Alia Gurtov</span></li><li class="author_list_item"><span class="author">Joel D Irish</span></li><li class="author_list_item"><span class="author">Ashley Kruger</span></li><li class="author_list_item"><span class="author">Myra F Laird</span></li><li class="author_list_item"><span class="author">Damiano Marchi</span></li><li class="author_list_item"><span class="author">Marc R Meyer</span></li><li class="author_list_item"><span class="author">Shahed Nalla</span></li><li class="author_list_item"><span class="author">Enquye W Negash</span></li><li class="author_list_item"><span class="author">Caley M Orr</span></li><li class="author_list_item"><span class="author">Davorka Radovcic</span></li><li class="author_list_item"><span class="author">Lauren Schroeder</span></li><li class="author_list_item"><span class="author">Jill E Scott</span></li><li class="author_list_item"><span class="author">Zachary Throckmorton</span></li><li class="author_list_item"><span class="author">Caroline VanSickle</span></li><li class="author_list_item"><span class="author">Christopher S Walker</span></li><li class="author_list_item"><span class="author">Pianpian Wei</span></li><li class="author_list_item"><span class="author">Bernhard Zipfel<span class="author_suffix"> <picture>
<source srcset="../../assets/img/icons/corresponding-author.svg" type="image/svg+xml">
<img src="../../assets/img/icons/corresponding-author@1x.png"
srcset="../../assets/img/icons/corresponding-author@2x.png 2x, ../../assets/img/icons/corresponding-author@1x.png 1x"
alt="Is a corresponding author" class="author_icon">
</picture></span></span></li>
</ol>
<ol class="institution_list" aria-label="Author institutions">
<li class="institution_list_item">
<span class="institution">University of the Witwatersrand, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Wisconsin-Madison, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Texas A&M University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Duke University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Zurich, Switzerland<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Arkansas, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Kent, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Max Planck Institute for Evolutionary Anthropology, Germany<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Mercyhurst University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">New York University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">New York Consortium in Evolutionary Primatology, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Dartmouth College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Colorado Denver, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Loughborough University, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Tulane University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Lehman College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">American Museum of Natural History, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Cape Town, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Museo Nacional de Ciencias Naturales, Spain<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Modesto Junior College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Louisiana State University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Nazarbayev University, Kazakhstan<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Missouri, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Kentucky College of Medicine, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Simon Fraser University, Canada<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Université de Montréal, Canada<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Australian National University, Australia<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Biology Department, Universidad Autònoma de Madrid, Spain<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Midwestern University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Liverpool John Moores University, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Pisa, Italy<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Chaffey College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Johannesburg, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">George Washington University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Colorado School of Medicine, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Croatian Natural History Museum, Croatia<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Iowa, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Lincoln Memorial University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Smithsonian Institution, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
</ol>
</div>
Authors Between Three And Ten Authors
- Lee R Berger
- John Hawks
- Darryl J de Ruiter
- Steven E Churchill
- Peter Schmid
- University of the Witwatersrand, South Africa;
- University of Wisconsin-Madison, United States;
- Texas A&M University, United States;
- Duke University, United States;
- University of Zurich, Switzerland;
- University of Arkansas, United States;
- University of Kent, United Kingdom;
- Max Planck Institute for Evolutionary Anthropology, Germany;
- Mercyhurst University, United States;
- New York University, United States;
- New York Consortium in Evolutionary Primatology, United States;
- Dartmouth College, United States;
- University of Colorado Denver, United States;
- Loughborough University, United Kingdom;
- Tulane University, United States;
- Lehman College, United States;
- American Museum of Natural History, United States;
- University of Cape Town, South Africa;
- Museo Nacional de Ciencias Naturales, Spain;
- Modesto Junior College, United States;
- Louisiana State University, United States;
- Nazarbayev University, Kazakhstan;
- University of Missouri, United States;
- University of Kentucky College of Medicine, United States;
- Simon Fraser University, Canada;
- Université de Montréal, Canada;
- Australian National University, Australia;
- Biology Department, Universidad Autònoma de Madrid, Spain;
- Midwestern University, United States;
- Liverpool John Moores University, United Kingdom;
- University of Pisa, Italy;
- Chaffey College, United States;
- University of Johannesburg, South Africa;
- George Washington University, United States;
- University of Colorado School of Medicine, United States;
- Croatian Natural History Museum, Croatia;
- University of Iowa, United States;
- Lincoln Memorial University, United States;
- Smithsonian Institution, United States;
HTML
<div class="authors" data-behaviour="Authors">
<ol class="author_list" aria-label="Authors of this article">
<li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Lee R Berger</a><span class="author_suffix"> <picture>
<source srcset="../../assets/img/icons/corresponding-author.svg" type="image/svg+xml">
<img src="../../assets/img/icons/corresponding-author@1x.png"
srcset="../../assets/img/icons/corresponding-author@2x.png 2x, ../../assets/img/icons/corresponding-author@1x.png 1x"
alt="Is a corresponding author" class="author_icon">
</picture></span></span></li><li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">John Hawks</a></span></li><li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Darryl J de Ruiter</a></span></li><li class="author_list_item"><span class="author">Steven E Churchill</span></li><li class="author_list_item"><span class="author">Peter Schmid</span></li>
</ol>
<ol class="institution_list" aria-label="Author institutions">
<li class="institution_list_item">
<span class="institution">University of the Witwatersrand, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Wisconsin-Madison, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Texas A&M University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Duke University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Zurich, Switzerland<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Arkansas, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Kent, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Max Planck Institute for Evolutionary Anthropology, Germany<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Mercyhurst University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">New York University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">New York Consortium in Evolutionary Primatology, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Dartmouth College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Colorado Denver, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Loughborough University, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Tulane University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Lehman College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">American Museum of Natural History, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Cape Town, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Museo Nacional de Ciencias Naturales, Spain<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Modesto Junior College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Louisiana State University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Nazarbayev University, Kazakhstan<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Missouri, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
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- University of Wisconsin-Madison, United States;
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- University of Arkansas, United States;
- University of Kent, United Kingdom;
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- Chaffey College, United States;
- University of Johannesburg, South Africa;
- George Washington University, United States;
- University of Colorado School of Medicine, United States;
- Croatian Natural History Museum, Croatia;
- University of Iowa, United States;
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<div class="profile-snippet__name">Name McNamerson</div>
<div class="profile-snippet__title">Title McTitleson</div>
<div class="profile-snippet__contact_details">
E: test.email@testemail.com
</div>
</div>
</div>
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Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aenean interdum odio et sem fringilla, sit amet vulputate turpis sagittis. Cras non urna quam. Mauris vitae dui id ipsum varius semper. Curabitur sit amet viverra eros, ut maximus nisl. In hendrerit convallis turpis quis pulvinar. Donec porttitor faucibus ex, eget finibus velit vestibulum vitae. Donec nec nulla sollicitudin, volutpat enim interdum, sollicitudin erat.
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Curabitur fermentum tellus ac rutrum efficitur. Phasellus libero magna, efficitur rutrum mauris a, mollis convallis lectus. Sed dapibus placerat eros ut vulputate. Vivamus quis sem accumsan, laoreet enim vel, dapibus ante. Nunc bibendum faucibus metus. Aliquam volutpat dapibus erat, quis ullamcorper nisl fermentum a. Praesent vulputate neque leo, vel rutrum dui auctor in. Duis eu magna et sem ullamcorper vehicula.
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In: Julius D, Clapham DE, editors. Annual Review of Physiology 75:423–452.https://doi.org/10.1146/annurev-physiol-040510-130049 -
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Philosophie AnatomiqueParis: Méquignon-Marvis -
Clinical TrialScripps Wired for Health Study (Registration: 000000)Scripps Translational Science Institute (sponsor) (2015)
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Conference
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Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)https://doi.org/10.1038/365833a0 -
Conference
- Jain BV
- Bollman B
- Richardson M
- Berger DR
- Helmstaedter MN
- Briggman KL
- Denk W
- Bowden JB
- Mendenhall JM
- Abraham WC
- Harris KM
- Kasthuri N
- Hayworth KJ
- Schalek R
- Tapia JC
- Lichtman JW
- Seung HS
Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR) -
Conference
- Jain BV
- Bollman B
- Richardson M
- Berger DR
- Helmstaedter MN
- Briggman KL
- Denk W
- Bowden JB
- Mendenhall JM
- Abraham WC
- Harris KM
- Kasthuri N
- Hayworth KJ
- Schalek R
- Tapia JC
- Lichtman JW
- Seung HS
Boundary learning by optimization with topological constraintsBoundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR) -
Data
- Bouveret R
- Bouveret R
- Schonrock N
- Ramialison M
- Doan T
- de Jong D
- Bondue A
- Kaur G
- Mohamed S
- Fonoudi H
- Chen C
- Wouters M
- Bhattacharya S
- Plachta N
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- Chapman G
- Blanpain C
- Harvey RP
NCBI Gene Expression Omnibus.https://doi.org/10.1038/365833a0 -
Data
- Bouveret R
- Bouveret R
- Schonrock N
- Ramialison M
- Doan T
- de Jong D
- Bondue A
- Kaur G
- Mohamed S
- Fonoudi H
- Chen C
- Wouters M
- Bhattacharya S
- Plachta N
- Dunwoodie SL
- Chapman G
- Blanpain C
- Harvey RP
NCBI Gene Expression Omnibus. -
Data
- Bouveret R
- Bouveret R
- Schonrock N
- Ramialison M
- Doan T
- de Jong D
- Bondue A
- Kaur G
- Mohamed S
- Fonoudi H
- Chen C
- Wouters M
- Bhattacharya S
- Plachta N
- Dunwoodie SL
- Chapman G
- Blanpain C
- Harvey RP
NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targetsNCBI Gene Expression Omnibus. Series accession number GSE44902 -
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
- Schrenk F
- Bromage TG
- Betzler CG
- Ring U
- Juwayeyi YM
Nature 365:833–836.https://doi.org/10.1038/365833a0 -
Patent
- Patterson JB
- Lonergan DG
- Flynn GA
- Qingpeng Z
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IRE-1alpha inhibitors (US20100941530)Mankind Corp, United States patent, United States -
Periodical
- The Economist
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Preprint
- Paris M
- Kaplan M
- Li XY
- Villalta JE
- Lott SE
- Eisen MB
arXivhttps://doi.org/10.1038/365833a0 -
Preprint
- Paris M
- Kaplan M
- Li XY
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Software
- DeLano W. L.
The Pymol Molecular Graphics SystemDeLano Scientific, Palo Alto, CA -
Thesis
- Assaf M.
Hebrew University of Jerusalem
atoms-reference
HTML
<ol class="reference-list">
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib1" id="bib1">
<div class="reference__label">Book</div>
<ol class="reference__authors_list">
<li class="reference__author">
Feldman JL</li>
<li class="reference__author">
Del Negro C</li>
<li class="reference__author">
Gray PA</li>
</ol>
<span class="reference__authors_list_suffix">(2013)</span>
<a href="https://doi.org/10.1146/annurev-physiol-040510-130049" class="reference__title">Understanding the rhythm of breathing: so near, yet so far</a>
<div class="reference__origin">In: Julius D, Clapham DE, editors. <i>Annual Review of Physiology</i> <b>75</b>:423–452.</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
<a href="https://doi.org/10.1146/annurev-physiol-040510-130049" class="doi__link">
https://doi.org/10.1146/annurev-physiol-040510-130049
</a>
</span>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib2" id="bib2">
<div class="reference__label">Book</div>
<ol class="reference__authors_list">
<li class="reference__author">
Geoffroy Saint-Hilaire E.</li>
</ol>
<span class="reference__authors_list_suffix">(1818)</span>
<div class="reference__title">Philosophie Anatomique</div>
<div class="reference__origin">Paris: Méquignon-Marvis</div>
<div class="doi__reference-spacing"></div>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib3" id="bib3">
<div class="reference__label">Clinical Trial</div>
<div class="reference__title">Scripps Wired for Health Study (Registration: 000000)</div>
<div class="reference__origin">Scripps Translational Science Institute (sponsor) (2015)</div>
<div class="doi__reference-spacing"></div>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib5" id="bib5">
<div class="reference__label">Conference</div>
<ol class="reference__authors_list">
<li class="reference__author">
Jain BV</li>
<li class="reference__author">
Bollman B</li>
<li class="reference__author">
Richardson M</li>
<li class="reference__author">
Berger DR</li>
<li class="reference__author">
Helmstaedter MN</li>
<li class="reference__author">
Briggman KL</li>
<li class="reference__author">
Denk W</li>
<li class="reference__author">
Bowden JB</li>
<li class="reference__author">
Mendenhall JM</li>
<li class="reference__author">
Abraham WC</li>
<li class="reference__author">
Harris KM</li>
<li class="reference__author">
Kasthuri N</li>
<li class="reference__author">
Hayworth KJ</li>
<li class="reference__author">
Schalek R</li>
<li class="reference__author">
Tapia JC</li>
<li class="reference__author">
Lichtman JW</li>
<li class="reference__author">
Seung HS</li>
</ol>
<span class="reference__authors_list_suffix">(2010)</span>
<a href="https://doi.org/10.1038/365833a0" class="reference__title">Boundary learning by optimization with topological constraints</a>
<div class="reference__origin">Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
<a href="https://doi.org/10.1038/365833a0" class="doi__link">
https://doi.org/10.1038/365833a0
</a>
</span>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib6" id="bib6">
<div class="reference__label">Conference</div>
<ol class="reference__authors_list">
<li class="reference__author">
Jain BV</li>
<li class="reference__author">
Bollman B</li>
<li class="reference__author">
Richardson M</li>
<li class="reference__author">
Berger DR</li>
<li class="reference__author">
Helmstaedter MN</li>
<li class="reference__author">
Briggman KL</li>
<li class="reference__author">
Denk W</li>
<li class="reference__author">
Bowden JB</li>
<li class="reference__author">
Mendenhall JM</li>
<li class="reference__author">
Abraham WC</li>
<li class="reference__author">
Harris KM</li>
<li class="reference__author">
Kasthuri N</li>
<li class="reference__author">
Hayworth KJ</li>
<li class="reference__author">
Schalek R</li>
<li class="reference__author">
Tapia JC</li>
<li class="reference__author">
Lichtman JW</li>
<li class="reference__author">
Seung HS</li>
</ol>
<span class="reference__authors_list_suffix">(2010)</span>
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__title">Boundary learning by optimization with topological constraints</a>
<div class="reference__origin">Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)</div>
<div class="doi__reference-spacing"></div>
<div class="reference__link-outer">
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__link">https://www.gov.uk/government/publications/educational-excellence-everywhere</a>
</div>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib7" id="bib7">
<div class="reference__label">Conference</div>
<ol class="reference__authors_list">
<li class="reference__author">
Jain BV</li>
<li class="reference__author">
Bollman B</li>
<li class="reference__author">
Richardson M</li>
<li class="reference__author">
Berger DR</li>
<li class="reference__author">
Helmstaedter MN</li>
<li class="reference__author">
Briggman KL</li>
<li class="reference__author">
Denk W</li>
<li class="reference__author">
Bowden JB</li>
<li class="reference__author">
Mendenhall JM</li>
<li class="reference__author">
Abraham WC</li>
<li class="reference__author">
Harris KM</li>
<li class="reference__author">
Kasthuri N</li>
<li class="reference__author">
Hayworth KJ</li>
<li class="reference__author">
Schalek R</li>
<li class="reference__author">
Tapia JC</li>
<li class="reference__author">
Lichtman JW</li>
<li class="reference__author">
Seung HS</li>
</ol>
<span class="reference__authors_list_suffix">(2010)</span>
<div class="reference__title">Boundary learning by optimization with topological constraints</div>
<div class="reference__origin">Boundary learning by optimization with topological constraints, IEEE Conference on Computer Vision and Pattern Recognition (CVPR)</div>
<div class="doi__reference-spacing"></div>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib8" id="bib8">
<div class="reference__label">Data</div>
<ol class="reference__authors_list">
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Schonrock N</li>
<li class="reference__author">
Ramialison M</li>
<li class="reference__author">
Doan T</li>
<li class="reference__author">
de Jong D</li>
<li class="reference__author">
Bondue A</li>
<li class="reference__author">
Kaur G</li>
<li class="reference__author">
Mohamed S</li>
<li class="reference__author">
Fonoudi H</li>
<li class="reference__author">
Chen C</li>
<li class="reference__author">
Wouters M</li>
<li class="reference__author">
Bhattacharya S</li>
<li class="reference__author">
Plachta N</li>
<li class="reference__author">
Dunwoodie SL</li>
<li class="reference__author">
Chapman G</li>
<li class="reference__author">
Blanpain C</li>
<li class="reference__author">
Harvey RP</li>
</ol>
<span class="reference__authors_list_suffix">(2015)</span>
<a href="https://doi.org/10.1038/365833a0" class="reference__title">NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets</a>
<div class="reference__origin">NCBI Gene Expression Omnibus.</div>
<div class="doi__reference-spacing"></div>
<span class="doi">
<a href="https://doi.org/10.1038/365833a0" class="doi__link">
https://doi.org/10.1038/365833a0
</a>
</span>
<ul class="reference__abstracts">
<li class="reference__abstract">
<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
</li>
<li class="reference__abstract">
<a href="https://google.co.uk" class="reference__abstract_link">Google Scholar</a>
</li>
</ul>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib10" id="bib10">
<div class="reference__label">Data</div>
<ol class="reference__authors_list">
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Schonrock N</li>
<li class="reference__author">
Ramialison M</li>
<li class="reference__author">
Doan T</li>
<li class="reference__author">
de Jong D</li>
<li class="reference__author">
Bondue A</li>
<li class="reference__author">
Kaur G</li>
<li class="reference__author">
Mohamed S</li>
<li class="reference__author">
Fonoudi H</li>
<li class="reference__author">
Chen C</li>
<li class="reference__author">
Wouters M</li>
<li class="reference__author">
Bhattacharya S</li>
<li class="reference__author">
Plachta N</li>
<li class="reference__author">
Dunwoodie SL</li>
<li class="reference__author">
Chapman G</li>
<li class="reference__author">
Blanpain C</li>
<li class="reference__author">
Harvey RP</li>
</ol>
<span class="reference__authors_list_suffix">(2015)</span>
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__title">NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets</a>
<div class="reference__origin">NCBI Gene Expression Omnibus.</div>
<div class="doi__reference-spacing"></div>
<div class="reference__link-outer">
<a href="https://www.gov.uk/government/publications/educational-excellence-everywhere" class="reference__link">https://www.gov.uk/government/publications/educational-excellence-everywhere</a>
</div>
<ul class="reference__abstracts">
<li class="reference__abstract">
<a href="https://pubmed.ncbi.nlm.nih.gov/" class="reference__abstract_link">PubMed</a>
</li>
<li class="reference__abstract">
<a href="https://google.co.uk" class="reference__abstract_link">Google Scholar</a>
</li>
</ul>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib12" id="bib12">
<div class="reference__label">Data</div>
<ol class="reference__authors_list">
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Bouveret R</li>
<li class="reference__author">
Schonrock N</li>
<li class="reference__author">
Ramialison M</li>
<li class="reference__author">
Doan T</li>
<li class="reference__author">
de Jong D</li>
<li class="reference__author">
Bondue A</li>
<li class="reference__author">
Kaur G</li>
<li class="reference__author">
Mohamed S</li>
<li class="reference__author">
Fonoudi H</li>
<li class="reference__author">
Chen C</li>
<li class="reference__author">
Wouters M</li>
<li class="reference__author">
Bhattacharya S</li>
<li class="reference__author">
Plachta N</li>
<li class="reference__author">
Dunwoodie SL</li>
<li class="reference__author">
Chapman G</li>
<li class="reference__author">
Blanpain C</li>
<li class="reference__author">
Harvey RP</li>
</ol>
<span class="reference__authors_list_suffix">(2015)</span>
<div class="reference__title">NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets</div>
<div class="reference__origin">NCBI Gene Expression Omnibus. Series accession number <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44902">GSE44902</a></div>
<div class="doi__reference-spacing"></div>
</div>
</li>
<li class="reference-list__item">
<div class="reference" data-popup-label="See in references" data-popup-contents="bib13" id="bib13">
<ol class="reference__authors_list">
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
Bromage TG</li>
<li class="reference__author">
Betzler CG</li>
<li class="reference__author">
Ring U</li>
<li class="reference__author">
Juwayeyi YM</li>
<li class="reference__author">
<a href="https://scholar.google.com/scholar?q=%22author:Schrenk%20F%22" class="reference__authors_link">Schrenk F</a></li>
<li class="reference__author">
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<li class="social-links__list_item">
<a href="https://www.linkedin.com/company/elife-sciences-publications-ltd" class="social-links__list_link" aria-label="LinkedIn">
<svg width="28" height="28">
<path d="M22.3830154,22.3830154 L18.8384,22.3830154 L18.8384,16.832 C18.8384,15.5083077 18.8147692,13.8043077 16.9948308,13.8043077 C15.1486769,13.8043077 14.8662154,15.2465231 14.8662154,16.7356308 L14.8662154,22.3826462 L11.3216,22.3826462 L11.3216,10.9675077 L14.7244308,10.9675077 L14.7244308,12.5275077 L14.7720615,12.5275077 C15.465918,11.3411519 16.7560586,10.632589 18.1294769,10.6835692 C21.7220923,10.6835692 22.3844923,13.0466462 22.3844923,16.1208615 L22.3830154,22.3830154 Z M7.32209231,9.4071385 C6.1860511,9.40734236 5.26494244,8.48656431 5.26473849,7.3505231 C5.26453461,6.21448189 6.18531266,5.29337322 7.32135387,5.29316926 C8.45739508,5.29296537 9.37850375,6.21374341 9.37870773,7.34978462 C9.37880563,7.89533086 9.16218215,8.41857185 8.77649194,8.80440054 C8.39080174,9.19022923 7.86763855,9.40704054 7.32209231,9.4071385 M9.0944,22.3830154 L5.54609231,22.3830154 L5.54609231,10.9675077 L9.0944,10.9675077 L9.0944,22.3830154 Z M24.1501538,2.00147692 L3.76492308,2.00147692 C2.80147497,1.99060441 2.01138912,2.76234691 1.99963077,3.72578462 L1.99963077,24.1955692 C2.01098655,25.1594712 2.80100881,25.9319778 3.76492308,25.9218636 L24.1501538,25.9218636 C25.115975,25.9338359 25.9090911,25.1613738 25.9224615,24.1955692 L25.9224615,3.72430769 C25.9086895,2.75896671 25.1155091,1.98726833 24.1501538,1.9998447" id="Path_2520" fill="#212121" fill-rule="nonzero"></path>
</svg>
</a>
</li>
<li class="social-links__list_item">
<a rel='me' href='https://fediscience.org/@eLife' class='social-links__list_link' aria-label='Mastodon'>
<svg width="28px" height="28px">
<g id="Artboard" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g id="Group-7" transform="translate(3.000000, 2.000000)" fill="#212121" fill-rule="nonzero">
<g id="mastodon-24px-black">
<path d="M11.5412949,0 C14.6936837,0.0250851513 17.7279692,0.357269448 19.4950021,1.1471931 C19.4950021,1.1471931 22.9995752,2.67324958 22.9995752,7.87958222 L23,8.27840764 C22.9948717,9.32900538 22.9399626,12.2394095 22.5108214,14.3877566 C22.1727192,16.0807457 19.4826471,17.9335557 16.3930961,18.2926354 C14.7820287,18.4797396 13.1958041,18.6517151 11.5043627,18.5762011 C8.73816776,18.4528442 6.55544838,17.9335557 6.55544838,17.9335557 C6.55544838,18.1956567 6.57205459,18.4452152 6.605267,18.6786105 C6.96489093,21.335697 9.312211,21.4948713 11.5357152,21.5690923 C13.7799439,21.6438306 15.7782681,21.0305374 15.7782681,21.0305374 L15.8704657,23.0052819 C15.8704657,23.0052819 14.3007146,23.8257215 11.5043627,23.9766203 C9.96237703,24.0591169 8.04774824,23.9388633 5.8177344,23.3643616 C0.981210876,22.1183796 0.149439349,17.1004442 0.022169409,12.0089343 C-0.0166226796,10.4972307 0.00729025582,9.07177343 0.00729025582,7.87958222 C0.00729025582,2.67324958 3.51199627,1.1471931 3.51199627,1.1471931 C5.27916201,0.357269448 8.31145476,0.0250851513 11.4638436,0 L11.5412949,0 Z M15.8599153,5 C14.461897,5 13.4033065,5.46697151 12.7035195,6.40103745 L12.0229667,7.39238391 L11.3425554,6.40103745 C10.642627,5.46697151 9.58403654,5 8.18615964,5 C6.97793807,5 6.00462882,5.36912752 5.26142334,6.08919046 C4.54070495,6.8092534 4.18190148,7.78253068 4.18190148,9.00730143 L4.18190148,15 L6.91358821,15 L6.91358821,9.1834452 C6.91358821,7.95732233 7.50716259,7.33498047 8.69445278,7.33498047 C10.0071899,7.33498047 10.6652556,8.0732355 10.6652556,9.5330285 L10.6652556,12.7167687 L13.3808194,12.7167687 L13.3808194,9.5330285 C13.3808194,8.0732355 14.0387436,7.33498047 15.3514807,7.33498047 C16.5387709,7.33498047 17.1323453,7.95732233 17.1323453,9.1834452 L17.1323453,15 L19.864032,15 L19.864032,9.00730143 C19.864032,7.78253068 19.5052285,6.8092534 18.7846516,6.08919046 C18.0413047,5.36912752 17.0679954,5 15.8599153,5 Z" id="Combined-Shape"></path>
</g>
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</g>
</svg>
</a>
</li>
</ul>
</div>
<div class="github-link-wrapper">
<a href="https://github.com/elifesciences" class="github-link">
<svg width="20" height="20">
<g id="Page-1" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g id="github-logo-svg" fill="#000000">
<path d="M9.99907916,1.72084569e-15 C4.47773105,1.72084569e-15 2.22044605e-16,4.5904205 2.22044605e-16,10.2533868 C2.22044605e-16,14.7833822 2.86503576,18.6260419 6.83876117,19.9818304 C7.33908346,20.0762447 7.5214095,19.7596422 7.5214095,19.4877292 C7.5214095,19.2441405 7.512815,18.5996059 7.50790386,17.7442129 C4.72635747,18.3635703 4.13947635,16.3695415 4.13947635,16.3695415 C3.68458209,15.1849574 3.02894503,14.8696139 3.02894503,14.8696139 C2.12099819,14.2338913 3.09770097,14.2464799 3.09770097,14.2464799 C4.10141502,14.3188641 4.62936247,15.30329 4.62936247,15.30329 C5.52134811,16.869937 6.97013414,16.417378 7.53982627,16.1549064 C7.63068234,15.4927479 7.88913104,15.0408184 8.17459099,14.784641 C5.95414224,14.525946 3.6195095,13.6460053 3.6195095,9.7171139 C3.6195095,8.59799041 4.00933116,7.68217225 4.64900703,6.96588286 C4.54587311,6.7065584 4.20270727,5.66359573 4.74722981,4.25241751 C4.74722981,4.25241751 5.5864207,3.97672792 7.4968538,5.30356275 C8.29430001,5.07570971 9.15006599,4.96241262 10.0003069,4.95800662 C10.849934,4.96241262 11.7050861,5.07570971 12.5037601,5.30356275 C14.4129654,3.97672792 15.2509285,4.25241751 15.2509285,4.25241751 C15.7966788,5.66359573 15.453513,6.7065584 15.350993,6.96588286 C15.9918966,7.68217225 16.3786488,8.59799041 16.3786488,9.7171139 C16.3786488,13.6560761 14.0403327,14.5227989 11.8131312,14.7764585 C12.1716443,15.0930609 12.4914822,15.7187126 12.4914822,16.6748142 C12.4914822,18.045709 12.4792044,19.1516145 12.4792044,19.4877292 C12.4792044,19.7621599 12.6596888,20.0812801 13.1667639,19.981201 C17.1374198,18.6222653 20,14.7821233 20,10.2533868 C20,4.5904205 15.5222689,1.72084569e-15 9.99907916,1.72084569e-15" id="Fill-51"></path>
</g>
</g>
</svg>
<div class="github-link--text">Find us on GitHub</div>
</a>
</div>
<div class="carbon-neutral-wrapper">
<a href="https://positiveplanet.uk/company-dashboards/elife-sciences/" class="carbon-neutral-link">
<img src="../../assets/img/patterns/molecules/carbon-neutral.svg" alt="Positive Planet - Certified Carbon Neutral">
</a>
</div>
Sort Control
HTML
<div class="sort-control" role="toolbar" aria-label="sorting options">
<div class="sort-control__title visuallyhidden">Sort by:</div>
<ul class="sort-control__options">
<li class="sort-control__option"><a href="?sortby=date&amp;sort=desc" class="sort-control__link sort-control__link--descending">Date</a></li>
<li class="sort-control__option"><a href="?sortby=relevance&amp;sort=asc" class="sort-control__link sort-control__link--ascending">Relevance</a></li>
<li class="sort-control__option"><a href="?sortby=cite&amp;sort=desc" class="sort-control__link">Cite</a></li>
</ul>
</div>
Statistic
- 320
- Downloads
HTML
<dl class="statistic">
<dd class="statistic__value">
320
</dd>
<dt class="statistic__label">
Downloads
</dt>
</dl>
Jump Menu
HTML
<div class="jump-menu__wrapper" data-behaviour="JumpMenu">
<ul class="jump-menu__list">
<li class="jump-menu__item">
<a href="#abstract" class="jump-menu">Abstract</a>
</li>
<li class="jump-menu__item">
<a href="#digest" class="jump-menu">eLife digest</a>
</li>
<li class="jump-menu__item">
<a href="#introduction" class="jump-menu">Introduction</a>
</li>
<li class="jump-menu__item">
<a href="#results" class="jump-menu">Results</a>
</li>
<li class="jump-menu__item">
<a href="#discussion" class="jump-menu">Discussion</a>
</li>
<li class="jump-menu__item">
<a href="#materials-and-methods" class="jump-menu">Materials & methods</a>
</li>
<li class="jump-menu__item">
<a href="#references" class="jump-menu">References</a>
</li>
</ul>
</div>
Login Control
HTML
<div class="login-control"
data-behaviour="LoginControl">
<a href="#" class="button button--login">Log in / Register<span class="visuallyhidden"> (via Orcid)</span></a>
</div>
Login Control Logged In
HTML
<div class="login-control"
data-link-field-roots="profile-manager, logout"
data-profile-manager-text="Manage your profile" data-profile-manager-uri="#profileManageLink" data-logout-text="Log out" data-logout-uri="/log-out"
data-default-uri="#profileHome"
data-display-name="Kananinoheaokuuhomeopuukaimanaalohilo"
data-subsidiary-text="View my profile"
data-icon="
<picture class='login-control__icon'>
<source srcset='../../assets/img/icons/profile.svg'
type='image/svg+xml'
>
<img src='../../assets/img/icons/profile.png'
srcset='../../assets/img/icons/profile@2x.png 2x, ../../assets/img/icons/profile.png 1x'
alt='Profile icon'
>
</picture>
"
data-behaviour="LoginControl">
<a href="#profileHome" class="login-control__non_js_control_link">Kananinoheaokuuhomeopuukaimanaalohilo</a>
</div>
Main Menu
molecules-site-header-title
HTML
<div class="main-menu wrapper" id="mainMenu" data-behaviour="MainMenu" tabindex="0">
<div class="main-menu__title-container">
<div class="site-header__title clearfix" role="banner">
<div class="site-header__skip_to_content">
<a href="#maincontent" class="site-header__skip_to_content__link button button--default">Skip to Content</a>
</div>
<a href="#" class="site-header__logo_link">
<picture class="site-header__logo_link_image">
<source srcset="../../assets/img/patterns/organisms/elife-logo-xs.svg" type="image/svg+xml">
<img src="../../assets/img/patterns/organisms/elife-logo-xs@1x.png" alt="eLife logo" class="site-header__logo_link"/>
</picture>
<span class="visuallyhidden" >eLife home page</span>
</a>
</div>
</div>
<nav class="main-menu__container" role="navigation">
<h3 class="list-heading">Menu</h3>
<ul class="main-menu__list">
<li class="main-menu__list_item hidden-wide">
<a href="#" class="main-menu__list_link">Home</a>
</li>
<li class="main-menu__list_item hidden-wide">
<a href="#" class="main-menu__list_link">Magazine</a>
</li>
<li class="main-menu__list_item hidden-wide">
<a href="#ins" class="main-menu__list_link">Community</a>
</li>
<li class="main-menu__list_item hidden-wide">
<a href="#abo" class="main-menu__list_link">About</a>
</li>
<li class="main-menu__list_item">
<a href="#res" class="main-menu__list_link">Research categories</a>
</li>
<li class="main-menu__list_item end-of-group">
<a href="#" class="main-menu__list_link">Inside eLife</a>
</li>
<li class="main-menu__list_item hidden-wide">
<a href="#" class="main-menu__list_link">Search</a>
</li>
<li class="main-menu__list_item end-of-group hidden-wide">
<a href="#" class="main-menu__list_link">Subscribe to alerts</a>
</li>
<li class="main-menu__list_item hidden-wide">
<a href="#" class="main-menu__list_link">Submit your research</a>
</li>
<li class="main-menu__list_item">
<a href="#" class="main-menu__list_link">Author guide</a>
</li>
<li class="main-menu__list_item">
<a href="#" class="main-menu__list_link">Reviewer guide</a>
</li>
</ul>
<a href="#siteHeader" class="to-top-link">Back to top</a>
</nav>
</div>
Pager
atoms-button
HTML
<div class="pager" >
<a href="#" class="button button--default">Previous</a>
<a href="#" class="button button--default">Next</a>
</div>
Pager First Page
atoms-button
HTML
<div class="pager" data-behaviour="Pager" data-targetId="idOfListElementToLoadContentInTo">
<a href="#" class="button button--default">Previous</a>
<a href="#" class="button button--default button--full">Load more</a>
</div>
Pager Previous Only
atoms-button
HTML
<div class="pager" >
<a href="#" class="button button--default">Previous</a>
<a href="#" class="button button--default">Next</a>
</div>
Select Nav
HTML
<form method="GET" action="/path/to/archive" data-behaviour="SelectNav">
<div class="form-item">
<label for="archiveYear"
class="form-item__label visuallyhidden">
Archive year
</label>
<select class="select"
id="archiveYear"
>
<option value="2016" >2016</option>
<option value="2015" >2015</option>
<option value="2014" >2014</option>
</select>
</div>
<button class="button button--default button--extra-small" type="submit" name="button-name">Go</button>
</form>
Site Header Nav Bar
HTML
<nav class="">
<ul class="">
<li class="">
<a href="#">
[Do not use this base pattern directly: see the following variants of this pattern for usage]
</a>
</li>
</ul>
</nav>
Site Header Nav Bar Primary
HTML
<nav class="nav-primary">
<ul class="nav-primary__list clearfix">
<li class="nav-primary__item nav-primary__item--first">
<a href="#mainMenu">
Menu
</a>
</li>
<li class="nav-primary__item">
<a href="#">
Home
</a>
</li>
<li class="nav-primary__item">
<a href="#">
Magazine
</a>
</li>
<li class="nav-primary__item">
<a href="#">
Community
</a>
</li>
<li class="nav-primary__item">
<a href="#">
About
</a>
</li>
</ul>
</nav>
Site Header Nav Bar Secondary
HTML
<nav class="nav-secondary">
<ul class="nav-secondary__list clearfix">
<li class="nav-secondary__item nav-secondary__item--search">
<a href="#" rel="search">
Search
</a>
</li>
<li class="nav-secondary__item nav-secondary__item--alert">
<a href="#">
Alerts
</a>
</li>
<li class="nav-secondary__item nav-secondary__item--hide-narrow">
<a href="#" class="button button--default button--extra-small" aria-label="Descriptive and accessible name">Submit your research</a>
</li>
</ul>
</nav>
Site Header Title
HTML
<div class="site-header__title clearfix" role="banner">
<div class="site-header__skip_to_content">
<a href="#maincontent" class="site-header__skip_to_content__link button button--default">Skip to Content</a>
</div>
<a href="#" class="site-header__logo_link">
<picture class="site-header__logo_link_image">
<source srcset="../../assets/img/patterns/organisms/elife-logo-xs.svg" type="image/svg+xml">
<img src="../../assets/img/patterns/organisms/elife-logo-xs@1x.png" alt="eLife logo" class="site-header__logo_link"/>
</picture>
<span class="visuallyhidden" >eLife home page</span>
</a>
</div>
Site Header Title Border Variant
HTML
<header class="site-header clearfix" id="siteHeader">
<div class="site-header__title-border clearfix" role="banner">
<div class="site-header__skip_to_content">
<a href="#maincontent" class="site-header__skip_to_content__link button button--default">Skip to Content</a>
</div>
<a href="#" class="site-header__logo_link">
<picture class="site-header__logo_link_image">
<source srcset="../../assets/img/patterns/organisms/elife-logo-xs.svg" type="image/svg+xml">
<img src="../../assets/img/patterns/organisms/elife-logo-xs@1x.png" alt="eLife logo" class="site-header__logo_link"/>
</picture>
<span class="visuallyhidden" >eLife home page</span>
</a>
</div>
</header>
Site Header Title Wrapped
HTML
<header class="site-header clearfix" id="siteHeader">
<div class="site-header__title clearfix" role="banner">
<div class="site-header__skip_to_content">
<a href="#maincontent" class="site-header__skip_to_content__link button button--default">Skip to Content</a>
</div>
<a href="#" class="site-header__logo_link">
<picture class="site-header__logo_link_image">
<source srcset="../../assets/img/patterns/organisms/elife-logo-xs.svg" type="image/svg+xml">
<img src="../../assets/img/patterns/organisms/elife-logo-xs@1x.png" alt="eLife logo" class="site-header__logo_link"/>
</picture>
<span class="visuallyhidden" >eLife home page</span>
</a>
</div>
</header>
Tabbed Navigation
HTML
<nav class="tabbed-navigation" data-behaviour="TabbedNavigation">
<ul class="tabbed-navigation__tabs">
<li class="tabbed-navigation__tab-label">
<a href="#">[Do not use this base pattern directly: see the following variants of this pattern for usage]</a>
</li>
</ul>
</nav>
Tabbed Navigation Active Tab First
HTML
<nav class="tabbed-navigation" data-behaviour="TabbedNavigation">
<ul class="tabbed-navigation__tabs">
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--active">
<a href="#">Full text</a>
</li>
<li class="tabbed-navigation__tab-label">
<a href="#">Figures<span class="tabbed-navigation__tab-label--long"> and data</span></a>
</li>
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--side-by-side" data-side-by-side-link="#">
<a href="#">Peer review</a>
</li>
</ul>
</nav>
Tabbed Navigation Active Tab Fourth
HTML
<nav class="tabbed-navigation" data-behaviour="TabbedNavigation">
<ul class="tabbed-navigation__tabs">
<li class="tabbed-navigation__tab-label">
<a href="#">Full text</a>
</li>
<li class="tabbed-navigation__tab-label">
<a href="#">Figures<span class="tabbed-navigation__tab-label--long"> and data</span></a>
</li>
<li class="tabbed-navigation__tab-label">
<a href="#">Peer review</a>
</li>
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--side-by-side tabbed-navigation__tab-label--active" data-side-by-side-link="#">
<a href="#">Side by side</a>
</li>
</ul>
</nav>
Tabbed Navigation Active Tab Second
HTML
<nav class="tabbed-navigation" data-behaviour="TabbedNavigation">
<ul class="tabbed-navigation__tabs">
<li class="tabbed-navigation__tab-label">
<a href="#">Full text</a>
</li>
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--active">
<a href="#">Figures<span class="tabbed-navigation__tab-label--long"> and data</span></a>
</li>
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--side-by-side" data-side-by-side-link="#">
<a href="#">Peer review</a>
</li>
</ul>
</nav>
Tabbed Navigation Active Tab Third
HTML
<nav class="tabbed-navigation" data-behaviour="TabbedNavigation">
<ul class="tabbed-navigation__tabs">
<li class="tabbed-navigation__tab-label">
<a href="#">Full text</a>
</li>
<li class="tabbed-navigation__tab-label">
<a href="#">Figures<span class="tabbed-navigation__tab-label--long"> and data</span></a>
</li>
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--active">
<a href="#">Peer review</a>
</li>
<li class="tabbed-navigation__tab-label tabbed-navigation__tab-label--side-by-side" data-side-by-side-link="#">
<a href="#">Side by side</a>
</li>
</ul>
</nav>
View Selector
HTML
<div class="view-selector" data-behaviour="ViewSelector">
<ul class="view-selector__list">
<li class="view-selector__list-item view-selector__list-item--primary view-selector__list-item--active">
<a href="#article" class="view-selector__link view-selector__link--primary">Article</a>
</li>
</ul>
</div>
View Selector Article
HTML
<div class="view-selector view-selector--has-secondary" data-behaviour="ViewSelector" data-side-by-side-link="#sideBySide">
<ul class="view-selector__list">
<li class="view-selector__list-item view-selector__list-item--primary view-selector__list-item--active">
<a href="#article" class="view-selector__link view-selector__link--primary">Article</a>
</li>
<li class="view-selector__list-item view-selector__list-item--secondary">
<a href="#figures" class="view-selector__link view-selector__link--secondary">Figures and data</a>
</li>
<li class="view-selector__list-item">
<a href="#rds" class="view-selector__link"><span>Executable code</span></a>
</li>
<li class="view-selector__list-item view-selector__divider"></li>
<li class="view-selector__jump_link_item view-selector__list-item">
<a href="#abstract" class="view-selector__jump_link">Abstract</a>
</li>
<li class="view-selector__jump_link_item view-selector__list-item">
<a href="#digest" class="view-selector__jump_link">eLife digest</a>
</li>
<li class="view-selector__jump_link_item view-selector__list-item">
<a href="#introduction" class="view-selector__jump_link">Introduction</a>
</li>
<li class="view-selector__jump_link_item view-selector__list-item">
<a href="#results" class="view-selector__jump_link">Results</a>
</li>
<li class="view-selector__jump_link_item view-selector__list-item">
<a href="#discussion" class="view-selector__jump_link">Discussion</a>
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<table><thead><tr><th>F(Dfn, Dfd)</th><th>Partial η<sup>2</sup></th><th>Original effect size <em>f</em></th><th>Replication total sample size</th><th>Detectable effect size <em>f</em></th></tr></thead><tbody><tr><td>F(24,39) = 0.8678 (interaction)</td><td>0.348120</td><td>0.7307699</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.3895070<a class="xref-table-fn" href="#tblfn3">†</a></td></tr><tr><td>F(2,39) = 0.8075 (treatments)</td><td>0.039766</td><td>0.2035014</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.2415459<a class="xref-table-fn" href="#tblfn3">†</a></td></tr><tr><td>F(12,39) = 187.6811 (hematology parameters)</td><td>0.982978</td><td>7.599178</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.3331365<a class="xref-table-fn" href="#tblfn4">‡</a></td></tr></tbody></table>
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<h6 class="caption-text__heading">Many features are conserved between the mammalian nephron and planarian protonephridia.</h6>
<div class="caption-text__body"><p>(A) Image of a young adult C. elegans and schematic depicting the twelve pairs of sensory neurons in the anterior amphid individuals carrying a virus with k deleterious mutations at its endemic equilibrium. class carrying the fewest number of deleterious mutations is defined as mutation class k = 0. Inset: variation in the basic reproductive rate of infected individuals (gray histogram) and variation in the net reproductive rate R of infected individuals (brown histogram) resulting from variation in the number of deleterious mutations carried by circulating viruses.</p></div>
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<table><thead><tr><th>F(Dfn, Dfd)</th><th>Partial η<sup>2</sup></th><th>Original effect size <em>f</em></th><th>Replication total sample size</th><th>Detectable effect size <em>f</em></th></tr></thead><tbody><tr><td>F(24,39) = 0.8678 (interaction)</td><td>0.348120</td><td>0.7307699</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.3895070<a class="xref-table-fn" href="#tblfn3">†</a></td></tr><tr><td>F(2,39) = 0.8075 (treatments)</td><td>0.039766</td><td>0.2035014</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.2415459<a class="xref-table-fn" href="#tblfn3">†</a></td></tr><tr><td>F(12,39) = 187.6811 (hematology parameters)</td><td>0.982978</td><td>7.599178</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.3331365<a class="xref-table-fn" href="#tblfn4">‡</a></td></tr></tbody></table>
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<table><thead><tr><th>F(Dfn, Dfd)</th><th>Partial η<sup>2</sup></th><th>Original effect size <em>f</em></th><th>Replication total sample size</th><th>Detectable effect size <em>f</em></th></tr></thead><tbody><tr><td>F(24,39) = 0.8678 (interaction)</td><td>0.348120</td><td>0.7307699</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.3895070<a class="xref-table-fn" href="#tblfn3">†</a></td></tr><tr><td>F(2,39) = 0.8075 (treatments)</td><td>0.039766</td><td>0.2035014</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.2415459<a class="xref-table-fn" href="#tblfn3">†</a></td></tr><tr><td>F(12,39) = 187.6811 (hematology parameters)</td><td>0.982978</td><td>7.599178</td><td>169<a class="xref-table-fn" href="#tblfn2">*</a></td><td>0.3331365<a class="xref-table-fn" href="#tblfn4">‡</a></td></tr></tbody></table>
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<h1>This is an h1</h1> <h2>This is an h2</h2> <h3>This is an h3</h3> <h4>This is an h4</h4> <h5>This is an h5</h5> <h6>This is an h6</h6> <p>This is a paragraph. It's a bit longer that the other things in this pattern so you can see how the wrapping works, which you can't really do unless you've got enough content. Right, that should do it. Onward!</p><div id="fig1" class="asset-viewer-inline asset-viewer-inline--figure nojs" data-variant="figure"> <div class="asset-viewer-inline__header_panel"> <div class="asset-viewer-inline__header_text"> <span class="asset-viewer-inline__header_text__prominent">Figure 1 </span> with 1 supplement <a href="#figuresPageFragLink" class="asset-viewer-inline__header_link">see all</a> </div> <div class="asset-viewer-inline__figure_access"> <a href="#downloadLink" class="asset-viewer-inline__download_all_link" download="#downloadfilename"><span class="visuallyhidden">Download asset</span></a> </div> </div> <figure class="captioned-asset"> <img src="https://placehold.it/90x90" alt="Meaningful alt text here please." srcset="https://prod-elife-published.s3.amazonaws.com/articles/16996/elife-16996-fig1-v2-480w.jpg 480w, https://prod-elife-published.s3.amazonaws.com/articles/16996/elife-16996-fig1-v2-742w.jpg 742w, https://prod-elife-published.s3.amazonaws.com/articles/16996/elife-16996-fig1-v2-972w.jpg 972w, https://prod-elife-published.s3.amazonaws.com/articles/16996/elife-16996-fig1-v2-1484w.jpg 1484w" class="nojs"> <figcaption class="captioned-asset__caption"> <h6 class="caption-text__heading">Many features are conserved between the mammalian nephron and planarian protonephridia.</h6> <div class="caption-text__body"><p>(A) Image of a young adult C. elegans and schematic depicting the twelve pairs of sensory neurons in the anterior amphid individuals carrying a virus with k deleterious mutations at its endemic equilibrium. class carrying the fewest number of deleterious mutations is defined as mutation class k = 0. Inset: variation in the basic reproductive rate of infected individuals (gray histogram) and variation in the net reproductive rate R of infected individuals (brown histogram) resulting from variation in the number of deleterious mutations carried by circulating viruses.</p></div> <span class="doi doi--asset"><a href="https://doi.org/10.7554/eLife.14734" class="doi__link">https://doi.org/10.7554/eLife.14734</a></span> </figcaption> </figure> <div class="additional-assets"> <h6 class="additional-assets__heading">How should this optional heading be styled?</h6> <dl class="additional-assets__list"> <dt class="additional-asset__text" id="pageLevelUniqueFragmentId5"> </dt> <dd class="additional-asset__access"> <span class="doi doi--asset"><a href="https://doi.org/10.7554/eLife.10181.001" class="doi__link">https://doi.org/10.7554/eLife.10181.001</a></span> <div> <a class="additional-asset__link additional-asset__link--download" href="#downloadLink" download="#download-me.png">Download me</a> </div> </dd> <dt class="additional-asset__text" id="pageLevelUniqueFragmentId6"> </dt> <dd class="additional-asset__access"> <span class="doi doi--asset"><a href="https://doi.org/10.7554/eLife.10181.002" class="doi__link">https://doi.org/10.7554/eLife.10181.002</a></span> <div> <a class="additional-asset__link additional-asset__link--download" href="#downloadLink" download="#download-me.png">Download me</a> </div> </dd> </dl> </div></div>
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Oliver HobertReviewing EditorColombia University, USA
eLife posts the editorial decision letter and author response on a selection of the published articles (subject to the approval of the authors). An edited version of the letter sent to the authors after peer review is shown, indicating the substantive concerns or comments; minor concerns are not usually shown.
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<div class="decision-letter-header__main_text"><p>eLife posts the editorial decision letter and author response on a selection of the published articles (subject to the approval of the authors). An edited version of the letter sent to the authors after peer review is shown, indicating the substantive concerns or comments; minor concerns are not usually shown.</p><p>Reviewers have the opportunity to discuss the decision before the letter is sent (see <a href="#">review process</a>). Similarly, the author response typically shows only responses to the major concerns raised by the reviewers.</p></div>
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<dt class="archive-nav-link__sub_links_list_heading">Highlights this month:</dt>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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October
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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September
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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August
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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July
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<dt class="archive-nav-link__sub_links_list_heading">Highlights this month:</dt>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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June
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<dt class="archive-nav-link__sub_links_list_heading">Highlights this month:</dt>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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May
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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April
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<dt class="archive-nav-link__sub_links_list_heading">Highlights this month:</dt>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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March
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Exploring">Exploring the ins and outs of breathing</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#The">The ancient origins of lubricated joints</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#Modulating">Modulating protein quality control</a></dd>
<dd class="archive-nav-link__sub_links_list_item"><a class="archive-nav-link__sub_link" href="#How">How open science helps researchers succeed</a></dd>
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The epidermal growth factor receptor (EGFR) is activated by dimerization, but activation also generates higher-order multimers, whose nature and function are poorly understood. We have characterized ligand-induced dimerization and multimerization of EGFR using single-molecule analysis, and show that multimerization can be blocked by mutations in a specific region of Domain IV of the extracellular module. These mutations reduce autophosphorylation of the C-terminal tail of EGFR and attenuate phosphorylation of phosphatidyl inositol 3-kinase, which is recruited by EGFR. The catalytic activity of EGFR is switched on through allosteric activation of one kinase domain by another, and we show that if this is restricted to dimers, then sites in the tail that are proximal to the kinase domain are phosphorylated in only one subunit. We propose a structural model for EGFR multimerization through self-association of ligand-bound dimers, in which the majority of kinase domains are activated cooperatively, thereby boosting tail phosphorylation.
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<i>Homo naledi</i> is a previously-unknown species of extinct hominin discovered within the Dinaledi Chamber of the Rising Star cave system, Cradle of Humankind, South Africa. This species is characterized by body mass and stature similar to small-bodied human populations but a small endocranial volume similar to australopiths. Cranial morphology of <i>H. naledi</i> is unique, but most similar to early <i>Homo</i> species including <i>Homo erectus</i>, <i>Homo habilis</i> or <i>Homo rudolfensis</i>. While primitive, the dentition is generally small and simple in occlusal morphology. <i>H. naledi</i> has humanlike manipulatory adaptations of the hand and wrist. It also exhibits a humanlike foot and lower limb. These humanlike aspects are contrasted in the postcrania with a more primitive or australopith-like trunk, shoulder, pelvis and proximal femur. Representing at least 15 individuals with most skeletal elements repeated multiple times, this is the largest assemblage of a single species of hominins yet discovered in Africa.
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Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa
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A new hominin species has been unearthed in the Dinaledi Chamber of the Rising Star cave system in the largest assemblage of a single species of hominins yet discovered in Africa.
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Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa
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<i>Homo naledi</i>, a new species of the genus <i>Homo</i> from the Dinaledi Chamber, South Africa
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Lee R Berger, John Hawks ... Scott A Williams
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Controlling traffic
Ramanath Hegde is a Postdoctoral Fellow at the Institute of Protein Biochemistry in Naples, Italy, where he investigates ways of preventing cells from destroying mutant proteins.
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Ramanath Hegde is a Postdoctoral Fellow at the Institute of Protein Biochemistry in Naples, Italy, where he investigates ways of preventing cells from destroying mutant proteins.
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Molecular basis for multimerization in the activation of the epidermal growth factor
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Lee R Berger, John Hawks ... Bernhard Zipfel
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<p>Optimal decision-making requires balancing fast but error-prone and more accurate but slower decisions through adjustments of decision thresholds. Here, we demonstrate two distinct correlates of such speed-accuracy adjustments by recording subthalamic nucleus (STN) activity and electroencephalography in 11 Parkinson’s disease patients during a perceptual decision-making task; STN low-frequency oscillatory (LFO) activity (2–8 Hz), coupled to activity at prefrontal electrode Fz, and STN beta activity (13–30 Hz) coupled to electrodes C3/C4 close to motor cortex. These two correlates differed not only in their cortical topography and spectral characteristics but also in the relative timing of recruitment and in their precise relationship with decision thresholds. Increases of STN LFO power preceding the response predicted increased thresholds only after accuracy instructions, while cue-induced reductions of STN beta power decreased thresholds irrespective of instructions. These findings indicate that distinct neural mechanisms determine whether a decision will be made in haste or with caution.</p>
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<p>Optimal decision-making requires balancing fast but error-prone and more accurate but slower decisions through adjustments of decision thresholds. Here, we demonstrate two distinct correlates of such speed-accuracy adjustments by recording subthalamic nucleus (STN) activity and electroencephalography in 11 Parkinson’s disease patients during a perceptual decision-making task; STN low-frequency oscillatory (LFO) activity (2–8 Hz), coupled to activity at prefrontal electrode Fz, and STN beta activity (13–30 Hz) coupled to electrodes C3/C4 close to motor cortex. These two correlates differed not only in their cortical topography and spectral characteristics but also in the relative timing of recruitment and in their precise relationship with decision thresholds. Increases of STN LFO power preceding the response predicted increased thresholds only after accuracy instructions, while cue-induced reductions of STN beta power decreased thresholds irrespective of instructions. These findings indicate that distinct neural mechanisms determine whether a decision will be made in haste or with caution.</p>
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Lee R BergerOptimal decision-making requires balancing fast but error-prone and more accurate but slower decisions through adjustments of decision thresholds. Here, we demonstrate two distinct correlates of such speed-accuracy adjustments by recording subthalamic nucleus (STN) activity and electroencephalography in 11 Parkinson’s disease patients during a perceptual decision-making task; STN low-frequency oscillatory (LFO) activity (2–8 Hz), coupled to activity at prefrontal electrode Fz, and STN beta activity (13–30 Hz) coupled to electrodes C3/C4 close to motor cortex. These two correlates differed not only in their cortical topography and spectral characteristics but also in the relative timing of recruitment and in their precise relationship with decision thresholds. Increases of STN LFO power preceding the response predicted increased thresholds only after accuracy instructions, while cue-induced reductions of STN beta power decreased thresholds irrespective of instructions. These findings indicate that distinct neural mechanisms determine whether a decision will be made in haste or with caution.
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<p>Optimal decision-making requires balancing fast but error-prone and more accurate but slower decisions through adjustments of decision thresholds. Here, we demonstrate two distinct correlates of such speed-accuracy adjustments by recording subthalamic nucleus (STN) activity and electroencephalography in 11 Parkinson’s disease patients during a perceptual decision-making task; STN low-frequency oscillatory (LFO) activity (2–8 Hz), coupled to activity at prefrontal electrode Fz, and STN beta activity (13–30 Hz) coupled to electrodes C3/C4 close to motor cortex. These two correlates differed not only in their cortical topography and spectral characteristics but also in the relative timing of recruitment and in their precise relationship with decision thresholds. Increases of STN LFO power preceding the response predicted increased thresholds only after accuracy instructions, while cue-induced reductions of STN beta power decreased thresholds irrespective of instructions. These findings indicate that distinct neural mechanisms determine whether a decision will be made in haste or with caution.</p>
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Optimal decision-making requires balancing fast but error-prone and more accurate but slower decisions through adjustments of decision thresholds. Here, we demonstrate two distinct correlates of such speed-accuracy adjustments by recording subthalamic nucleus (STN) activity and electroencephalography in 11 Parkinson’s disease patients during a perceptual decision-making task; STN low-frequency oscillatory (LFO) activity (2–8 Hz), coupled to activity at prefrontal electrode Fz, and STN beta activity (13–30 Hz) coupled to electrodes C3/C4 close to motor cortex. These two correlates differed not only in their cortical topography and spectral characteristics but also in the relative timing of recruitment and in their precise relationship with decision thresholds. Increases of STN LFO power preceding the response predicted increased thresholds only after accuracy instructions, while cue-induced reductions of STN beta power decreased thresholds irrespective of instructions. These findings indicate that distinct neural mechanisms determine whether a decision will be made in haste or with caution.
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<p>Optimal decision-making requires balancing fast but error-prone and more accurate but slower decisions through adjustments of decision thresholds. Here, we demonstrate two distinct correlates of such speed-accuracy adjustments by recording subthalamic nucleus (STN) activity and electroencephalography in 11 Parkinson’s disease patients during a perceptual decision-making task; STN low-frequency oscillatory (LFO) activity (2–8 Hz), coupled to activity at prefrontal electrode Fz, and STN beta activity (13–30 Hz) coupled to electrodes C3/C4 close to motor cortex. These two correlates differed not only in their cortical topography and spectral characteristics but also in the relative timing of recruitment and in their precise relationship with decision thresholds. Increases of STN LFO power preceding the response predicted increased thresholds only after accuracy instructions, while cue-induced reductions of STN beta power decreased thresholds irrespective of instructions. These findings indicate that distinct neural mechanisms determine whether a decision will be made in haste or with caution.</p>
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Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa
- University of the Witwatersrand, South Africa;
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<h1 class="content-header__title content-header__title--medium"><i>Homo naledi</i>, a new species of the genus <i>Homo</i> from the Dinaledi Chamber, South Africa</h1>
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<li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Lee R Berger</a><span class="author_suffix"> <picture>
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<span class="date"> <time datetime="2016-02-29">Feb 29, 2016</time></span>
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Content Header Journal Article 2 Authors
Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa
- Lee R Berger
- Bernhard Zipfel
- University of the Witwatersrand, South Africa;
- Smithsonian Institution, United States;
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<h1 class="content-header__title content-header__title--medium"><i>Homo naledi</i>, a new species of the genus <i>Homo</i> from the Dinaledi Chamber, South Africa</h1>
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<li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Lee R Berger</a><span class="author_suffix"> <picture>
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<span class="institution">University of the Witwatersrand, South Africa<span class="institution_separator" aria-hidden="true">;</span>
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<span class="institution">Smithsonian Institution, United States<span class="institution_separator" aria-hidden="true">;</span>
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<span class="date"> <time datetime="2016-02-29">Feb 29, 2016</time></span>
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<a href="https://doi.org/10.7554/eLife.16370.1" class="doi__link">
https://doi.org/10.7554/eLife.16370.1
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Content Header Journal Article
Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa
- Lee R Berger
- John Hawks
- Darryl J de Ruiter
- Steven E Churchill
- Peter Schmid
- Lucas K Delezene
- Tracy L Kivell
- Heather M Garvin
- Scott A Williams
- Jeremy M DeSilva
- Matthew M Skinner
- Charles M Musiba
- Noel Cameron
- Trenton W Holliday
- William Harcourt-Smith
- Rebecca R Ackermann
- Markus Bastir
- Barry Bogin
- Debra Bolter
- Juliet Brophy
- Zachary D Cofran
- Kimberly A Congdon
- Andrew S Deane
- Mana Dembo
- Michelle Drapeau
- Marina C Elliott
- Elen M Feuerriegel
- Daniel Garcia-Martinez
- David J Green
- Alia Gurtov
- Joel D Irish
- Ashley Kruger
- Myra F Laird
- Damiano Marchi
- Marc R Meyer
- Shahed Nalla
- Enquye W Negash
- Caley M Orr
- Davorka Radovcic
- Lauren Schroeder
- Jill E Scott
- Zachary Throckmorton
- Caroline VanSickle
- Christopher S Walker
- Pianpian Wei
- Bernhard Zipfel
- University of the Witwatersrand, South Africa;
- University of Wisconsin-Madison, United States;
- Texas A&M University, United States;
- Duke University, United States;
- University of Zurich, Switzerland;
- University of Arkansas, United States;
- University of Kent, United Kingdom;
- Max Planck Institute for Evolutionary Anthropology, Germany;
- Mercyhurst University, United States;
- New York University, United States;
- New York Consortium in Evolutionary Primatology, United States;
- Dartmouth College, United States;
- University of Colorado Denver, United States;
- Loughborough University, United Kingdom;
- Tulane University, United States;
- Lehman College, United States;
- American Museum of Natural History, United States;
- University of Cape Town, South Africa;
- Museo Nacional de Ciencias Naturales, Spain;
- Modesto Junior College, United States;
- Louisiana State University, United States;
- Nazarbayev University, Kazakhstan;
- University of Missouri, United States;
- University of Kentucky College of Medicine, United States;
- Simon Fraser University, Canada;
- Université de Montréal, Canada;
- Australian National University, Australia;
- Biology Department, Universidad Autònoma de Madrid, Spain;
- Midwestern University, United States;
- Liverpool John Moores University, United Kingdom;
- University of Pisa, Italy;
- Chaffey College, United States;
- University of Johannesburg, South Africa;
- George Washington University, United States;
- University of Colorado School of Medicine, United States;
- Croatian Natural History Museum, Croatia;
- University of Iowa, United States;
- Lincoln Memorial University, United States;
- Smithsonian Institution, United States;
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<h1 class="content-header__title content-header__title--medium"><i>Homo naledi</i>, a new species of the genus <i>Homo</i> from the Dinaledi Chamber, South Africa</h1>
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<span class="date"> <time datetime="2016-02-29">Feb 29, 2016</time></span>
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Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa
- Lee R Berger
- John Hawks
- Darryl J de Ruiter
- Steven E Churchill
- Peter Schmid
- Lucas K Delezene
- Tracy L Kivell
- Heather M Garvin
- Scott A Williams
- Jeremy M DeSilva
- Matthew M Skinner
- Charles M Musiba
- Noel Cameron
- Trenton W Holliday
- William Harcourt-Smith
- Rebecca R Ackermann
- Markus Bastir
- Barry Bogin
- Debra Bolter
- Juliet Brophy
- Zachary D Cofran
- Kimberly A Congdon
- Andrew S Deane
- Mana Dembo
- Michelle Drapeau
- Marina C Elliott
- Elen M Feuerriegel
- Daniel Garcia-Martinez
- David J Green
- Alia Gurtov
- Joel D Irish
- Ashley Kruger
- Myra F Laird
- Damiano Marchi
- Marc R Meyer
- Shahed Nalla
- Enquye W Negash
- Caley M Orr
- Davorka Radovcic
- Lauren Schroeder
- Jill E Scott
- Zachary Throckmorton
- Caroline VanSickle
- Christopher S Walker
- Pianpian Wei
- Bernhard Zipfel
- University of the Witwatersrand, South Africa;
- University of Wisconsin-Madison, United States;
- Texas A&M University, United States;
- Duke University, United States;
- University of Zurich, Switzerland;
- University of Arkansas, United States;
- University of Kent, United Kingdom;
- Max Planck Institute for Evolutionary Anthropology, Germany;
- Mercyhurst University, United States;
- New York University, United States;
- New York Consortium in Evolutionary Primatology, United States;
- Dartmouth College, United States;
- University of Colorado Denver, United States;
- Loughborough University, United Kingdom;
- Tulane University, United States;
- Lehman College, United States;
- American Museum of Natural History, United States;
- University of Cape Town, South Africa;
- Museo Nacional de Ciencias Naturales, Spain;
- Modesto Junior College, United States;
- Louisiana State University, United States;
- Nazarbayev University, Kazakhstan;
- University of Missouri, United States;
- University of Kentucky College of Medicine, United States;
- Simon Fraser University, Canada;
- Université de Montréal, Canada;
- Australian National University, Australia;
- Biology Department, Universidad Autònoma de Madrid, Spain;
- Midwestern University, United States;
- Liverpool John Moores University, United Kingdom;
- University of Pisa, Italy;
- Chaffey College, United States;
- University of Johannesburg, South Africa;
- George Washington University, United States;
- University of Colorado School of Medicine, United States;
- Croatian Natural History Museum, Croatia;
- University of Iowa, United States;
- Lincoln Memorial University, United States;
- Smithsonian Institution, United States;
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<h1 class="content-header__title content-header__title--medium"><i>Homo naledi</i>, a new species of the genus <i>Homo</i> from the Dinaledi Chamber, South Africa</h1>
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<li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Lee R Berger</a><span class="author_suffix"> <picture>
<source srcset="../../assets/img/icons/corresponding-author.svg" type="image/svg+xml">
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</picture></span></span></li><li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">John Hawks</a></span></li><li class="author_list_item"><span class="author"><a href="#" data-behaviour="Popup" class="author_link">Darryl J de Ruiter</a></span></li><li class="author_list_item"><span class="author">Steven E Churchill</span></li><li class="author_list_item"><span class="author">Peter Schmid</span></li><li class="author_list_item"><span class="author">Lucas K Delezene</span></li><li class="author_list_item"><span class="author">Tracy L Kivell</span></li><li class="author_list_item"><span class="author">Heather M Garvin</span></li><li class="author_list_item"><span class="author">Scott A Williams</span></li><li class="author_list_item"><span class="author">Jeremy M DeSilva</span></li><li class="author_list_item"><span class="author">Matthew M Skinner</span></li><li class="author_list_item"><span class="author">Charles M Musiba</span></li><li class="author_list_item"><span class="author">Noel Cameron</span></li><li class="author_list_item"><span class="author">Trenton W Holliday</span></li><li class="author_list_item"><span class="author">William Harcourt-Smith</span></li><li class="author_list_item"><span class="author">Rebecca R Ackermann</span></li><li class="author_list_item"><span class="author">Markus Bastir</span></li><li class="author_list_item"><span class="author">Barry Bogin</span></li><li class="author_list_item"><span class="author">Debra Bolter</span></li><li class="author_list_item"><span class="author">Juliet Brophy</span></li><li class="author_list_item"><span class="author">Zachary D Cofran</span></li><li class="author_list_item"><span class="author">Kimberly A Congdon</span></li><li class="author_list_item"><span class="author">Andrew S Deane</span></li><li class="author_list_item"><span class="author">Mana Dembo</span></li><li class="author_list_item"><span class="author">Michelle Drapeau</span></li><li class="author_list_item"><span class="author">Marina C Elliott</span></li><li class="author_list_item"><span class="author">Elen M Feuerriegel</span></li><li class="author_list_item"><span class="author">Daniel Garcia-Martinez</span></li><li class="author_list_item"><span class="author">David J Green</span></li><li class="author_list_item"><span class="author">Alia Gurtov</span></li><li class="author_list_item"><span class="author">Joel D Irish</span></li><li class="author_list_item"><span class="author">Ashley Kruger</span></li><li class="author_list_item"><span class="author">Myra F Laird</span></li><li class="author_list_item"><span class="author">Damiano Marchi</span></li><li class="author_list_item"><span class="author">Marc R Meyer</span></li><li class="author_list_item"><span class="author">Shahed Nalla</span></li><li class="author_list_item"><span class="author">Enquye W Negash</span></li><li class="author_list_item"><span class="author">Caley M Orr</span></li><li class="author_list_item"><span class="author">Davorka Radovcic</span></li><li class="author_list_item"><span class="author">Lauren Schroeder</span></li><li class="author_list_item"><span class="author">Jill E Scott</span></li><li class="author_list_item"><span class="author">Zachary Throckmorton</span></li><li class="author_list_item"><span class="author">Caroline VanSickle</span></li><li class="author_list_item"><span class="author">Christopher S Walker</span></li><li class="author_list_item"><span class="author">Pianpian Wei</span></li><li class="author_list_item"><span class="author">Bernhard Zipfel<span class="author_suffix"> <picture>
<source srcset="../../assets/img/icons/corresponding-author.svg" type="image/svg+xml">
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<ol class="institution_list" aria-label="Author institutions">
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<span class="institution">University of the Witwatersrand, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Wisconsin-Madison, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Texas A&M University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Duke University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Zurich, Switzerland<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Arkansas, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Kent, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Max Planck Institute for Evolutionary Anthropology, Germany<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Mercyhurst University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">New York University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">New York Consortium in Evolutionary Primatology, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Dartmouth College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Colorado Denver, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Loughborough University, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Tulane University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Lehman College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">American Museum of Natural History, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Cape Town, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Museo Nacional de Ciencias Naturales, Spain<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Modesto Junior College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Louisiana State University, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Nazarbayev University, Kazakhstan<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Missouri, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Kentucky College of Medicine, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Simon Fraser University, Canada<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Université de Montréal, Canada<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Australian National University, Australia<span class="institution_separator" aria-hidden="true">;</span>
</span>
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<li class="institution_list_item">
<span class="institution">Biology Department, Universidad Autònoma de Madrid, Spain<span class="institution_separator" aria-hidden="true">;</span>
</span>
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<span class="institution">Midwestern University, United States<span class="institution_separator" aria-hidden="true">;</span>
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<span class="institution">Liverpool John Moores University, United Kingdom<span class="institution_separator" aria-hidden="true">;</span>
</span>
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<li class="institution_list_item">
<span class="institution">University of Pisa, Italy<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">Chaffey College, United States<span class="institution_separator" aria-hidden="true">;</span>
</span>
</li>
<li class="institution_list_item">
<span class="institution">University of Johannesburg, South Africa<span class="institution_separator" aria-hidden="true">;</span>
</span>
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<span class="institution">George Washington University, United States<span class="institution_separator" aria-hidden="true">;</span>
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<span class="institution">University of Colorado School of Medicine, United States<span class="institution_separator" aria-hidden="true">;</span>
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<span class="institution">Croatian Natural History Museum, Croatia<span class="institution_separator" aria-hidden="true">;</span>
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<span class="institution">University of Iowa, United States<span class="institution_separator" aria-hidden="true">;</span>
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<span class="institution">Smithsonian Institution, United States<span class="institution_separator" aria-hidden="true">;</span>
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Genetic Engineering: Increasing the uptake of carbon dioxide
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<h1 class="content-header__title content-header__title--medium">Genetic Engineering: Increasing the uptake of carbon dioxide</h1>
<div class="content-header__impact-statement">A mechanism for concentrating carbon dioxide has for the first time been successfully transferred into a species that lacks such a process.</div>
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<span class="date"> <time datetime="2020-12-03">Dec 3, 2020</time></span>
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<h1 class="content-header__title content-header__title--medium">Epidemiology and Global Health</h1>
<div class="content-header__impact-statement">Flatworms have organs called protonephridia that could be used as a <a href="#">model system</a> for the study of kidney disease.</div>
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<h1 class="content-header__title content-header__title--medium">Epidemiology and Global Health</h1>
<div class="content-header__impact-statement">Flatworms have organs called protonephridia that could be used as a <a href="#">model system</a> for the study of kidney disease.</div>
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<h1 class="content-header__title content-header__title--medium">Epidemiology and Global Health</h1>
<div class="content-header__impact-statement">Flatworms have organs called protonephridia that could be used as a <a href="#">model system</a> for the study of kidney disease.</div>
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<h1 class="content-header__title content-header__title--medium">Epidemiology and Global Health</h1>
<div class="content-header__impact-statement">Flatworms have organs called protonephridia that could be used as a <a href="#">model system</a> for the study of kidney disease.</div>
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<h1 class="content-header__title content-header__title--medium">Episode 2: July 2013</h1>
<div class="content-header__impact-statement">In this issue of the eLife podcast we discuss plants performing arithmetic division, the evolutionary dynamics of cancer, single-molecule measurements in the immune system, why blood vessels don’t grow in the retina.</div>
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